{"id":"https://openalex.org/W4399354918","doi":"https://doi.org/10.1093/bioinformatics/btag316","title":"Representation learning for multi-modal spatially resolved transcriptomics data","display_name":"Representation learning for multi-modal spatially resolved transcriptomics data","publication_year":2026,"publication_date":"2026-05-19","ids":{"openalex":"https://openalex.org/W4399354918","doi":"https://doi.org/10.1093/bioinformatics/btag316","pmid":"https://pubmed.ncbi.nlm.nih.gov/42179160"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag316","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag316","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5099022286","display_name":"Kalin Nonchev","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kalin Nonchev","raw_affiliation_strings":["Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","ETH Zurich"],"raw_orcid":"https://orcid.org/0009-0001-4904-8772","affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ETH Zurich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023834622","display_name":"Sonali Andani","orcid":"https://orcid.org/0000-0003-3251-5108"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sonali Andani","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","ETH Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ETH Zurich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093793517","display_name":"Joanna Ficek-Pascual","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Joanna Ficek-Pascual","raw_affiliation_strings":["Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","ETH Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ETH Zurich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101514604","display_name":"Marta Nowak","orcid":"https://orcid.org/0000-0003-2416-1354"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marta Nowak","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","University Hospital Zurich, University of Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"University Hospital Zurich, University of Zurich","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031539885","display_name":"Bettina Sobottka","orcid":"https://orcid.org/0000-0002-0890-5248"},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bettina Sobottka","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","University Hospital Zurich, University of Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"University Hospital Zurich, University of Zurich","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rudolf Aebersold","orcid":null},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rudolf Aebersold","raw_affiliation_strings":["University Hospital Zurich, University of Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Hospital Zurich, University of Zurich","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Melike Ak","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Melike Ak","raw_affiliation_strings":["ETH Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ETH Zurich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Faisal S Al-Quaddoomi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Faisal S Al-Quaddoomi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Silvana I Albert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Silvana I Albert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jonas Albinus","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jonas Albinus","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ilaria Alborelli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ilaria Alborelli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023834622","display_name":"Sonali Andani","orcid":"https://orcid.org/0000-0003-3251-5108"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sonali Andani","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Per-Olof Attinger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Per-Olof Attinger","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Marina Bacac","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marina Bacac","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Daniel Baumhoer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Baumhoer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Beatrice Beck-Schimmer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Beatrice Beck-Schimmer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Niko Beerenwinkel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Niko Beerenwinkel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Christian Beisel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Beisel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lara Bernasconi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lara Bernasconi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Anne Bertolini","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anne Bertolini","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bernd Bodenmiller","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bernd Bodenmiller","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ximena Bonilla","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ximena Bonilla","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lars Bosshard","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lars Bosshard","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Byron Calgua","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Byron Calgua","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ruben Casanova","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruben Casanova","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"St\u00e9phane Chevrier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"St\u00e9phane Chevrier","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Natalia Chicherova","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Natalia Chicherova","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ricardo Coelho","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ricardo Coelho","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Maya D\u2019Costa","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maya D\u2019Costa","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Esther Danenberg","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Esther Danenberg","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Natalie R Davidson","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Natalie R Davidson","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Monica-Andreea Dragan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Monica-Andreea Dragan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Reinhard Dummer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reinhard Dummer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Stefanie Engler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefanie Engler","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Martin Erkens","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Erkens","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Katja Eschbach","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katja Eschbach","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Cinzia Esposito","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cinzia Esposito","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Andr\u00e9 Fedier","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Fedier","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Pedro F Ferreira","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pedro F Ferreira","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093793517","display_name":"Joanna Ficek-Pascual","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Joanna Ficek-Pascual","raw_affiliation_strings":["Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Anja L Frei","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anja L Frei","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bruno Frey","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bruno Frey","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sandra Goetze","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandra Goetze","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Linda Grob","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Linda Grob","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gabriele Gut","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriele Gut","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Detlef G\u00fcnther","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Detlef G\u00fcnther","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Pirmin Haeuptle","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pirmin Haeuptle","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Viola Heinzelmann-Schwarz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Viola Heinzelmann-Schwarz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sylvia Herter","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sylvia Herter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Rene Holtackers","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rene Holtackers","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tamara Huesser","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tamara Huesser","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Alexander Immer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexander Immer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Anja Irmisch","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anja Irmisch","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Francis Jacob","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francis Jacob","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Andrea Jacobs","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrea Jacobs","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tim M Jaeger","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tim M Jaeger","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Katharina Jahn","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katharina Jahn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Alva R James","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alva R James","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Philip M Jermann","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Philip M Jermann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Andr\u00e9 Kahles","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andr\u00e9 Kahles","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Abdullah Kahraman","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Abdullah Kahraman","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001240413","display_name":"Viktor H. Koelzer","orcid":"https://orcid.org/0000-0001-9206-4885"},"institutions":[{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]},{"id":"https://openalex.org/I4210106471","display_name":"CRUK/MRC Oxford Institute for Radiation Oncology","ror":"https://ror.org/011hz4254","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801316944","https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210106471","https://openalex.org/I90344618"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Viktor H Koelzer","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","Department of Oncology, University of Oxford , Roosevelt Drive , Oxford OX3 7DQ,","Institute of Medical Genetics and Pathology, University Hospital Basel , Sch\u00f6nbeinstrasse 40 , Basel 4031,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Oncology, University of Oxford , Roosevelt Drive , Oxford OX3 7DQ,","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210106471"]},{"raw_affiliation_string":"Institute of Medical Genetics and Pathology, University Hospital Basel , Sch\u00f6nbeinstrasse 40 , Basel 4031,","institution_ids":["https://openalex.org/I2802542264"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Werner Kuebler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Werner Kuebler","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jack Kuipers","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jack Kuipers","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Christian P Kunze","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian P Kunze","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Christian Kurzeder","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Kurzeder","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Kjong-Van Lehmann","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kjong-Van Lehmann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mitchell Levesque","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mitchell Levesque","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ulrike Lischetti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ulrike Lischetti","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Flavio C Lombardo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Flavio C Lombardo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sebastian Lugert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sebastian Lugert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gerd Maass","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gerd Maass","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Markus G Manz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Markus G Manz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Philipp Markolin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Philipp Markolin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Martin Mehnert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Mehnert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Julien Mena","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Julien Mena","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Julian M Metzler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Julian M Metzler","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Nicola Miglino","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicola Miglino","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Emanuela S Milani","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Emanuela S Milani","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Holger Moch","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Holger Moch","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Simone Muenst","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simone Muenst","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Riccardo Murri","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Riccardo Murri","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Charlotte K Y Ng","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Charlotte K Y Ng","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Stefan Nicolet","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Nicolet","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101514604","display_name":"Marta Nowak","orcid":"https://orcid.org/0000-0003-2416-1354"},"institutions":[{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marta Nowak","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Monica Nunez Lopez","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Monica Nunez Lopez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Patrick G A Pedrioli","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patrick G A Pedrioli","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Lucas Pelkmans","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lucas Pelkmans","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Salvatore Piscuoglio","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Salvatore Piscuoglio","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Michael Prummer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Prummer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Laurie Pr\u00e9lot","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Laurie Pr\u00e9lot","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Natalie Rimmer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Natalie Rimmer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mathilde Ritter","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mathilde Ritter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Christian Rommel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Rommel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mar\u00eda L Rosano-Gonz\u00e1lez","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mar\u00eda L Rosano-Gonz\u00e1lez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gunnar R\u00e4tsch","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gunnar R\u00e4tsch","raw_affiliation_strings":["AI Center, ETH Zurich , Andreasstrasse 5 , Zurich 8092,","Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","University Hospital Zurich Medical Informatics Unit, , Zurich 8091,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AI Center, ETH Zurich , Andreasstrasse 5 , Zurich 8092,","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University Hospital Zurich Medical Informatics Unit, , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Natascha Santacroce","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Natascha Santacroce","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jacobo Sarabia del Castillo","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jacobo Sarabia del Castillo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Ramona Schlenker","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ramona Schlenker","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Petra C Schwalie","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Petra C Schwalie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Severin Schwan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Severin Schwan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tobias Sch\u00e4r","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tobias Sch\u00e4r","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gabriela Senti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gabriela Senti","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Wenguang Shao","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wenguang Shao","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Franziska Singer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Franziska Singer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sujana Sivapatham","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sujana Sivapatham","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Berend Snijder","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Berend Snijder","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031539885","display_name":"Bettina Sobottka","orcid":"https://orcid.org/0000-0002-0890-5248"},"institutions":[{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Bettina Sobottka","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Vipin T Sreedharan","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vipin T Sreedharan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Stefan Stark","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stefan Stark","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Daniel J Stekhoven","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel J Stekhoven","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tanmay Tanna","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tanmay Tanna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Alexandre P A Theocharides","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alexandre P A Theocharides","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tinu M Thomas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tinu M Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Markus Tolnay","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Markus Tolnay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Vinko Tosevski","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vinko Tosevski","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Nora C Toussaint","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nora C Toussaint","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mustafa A Tuncel","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mustafa A Tuncel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Marina Tusup","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marina Tusup","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Audrey Van Drogen","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Audrey Van Drogen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Marcus Vetter","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marcus Vetter","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Tatjana Vlajnic","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tatjana Vlajnic","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Sandra Weber","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandra Weber","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Walter P Weber","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Walter P Weber","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Rebekka Wegmann","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rebekka Wegmann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Michael Weller","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Weller","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Fabian Wendt","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fabian Wendt","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Norbert Wey","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Norbert Wey","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Andreas Wicki","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andreas Wicki","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Mattheus H E Wildschut","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mattheus H E Wildschut","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bernd Wollscheid","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bernd Wollscheid","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Shuqing Yu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shuqing Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Johanna Ziegler","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Johanna Ziegler","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Marc Zimmermann","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marc Zimmermann","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Martin Zoche","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin Zoche","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Gregor Zuend","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gregor Zuend","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001240413","display_name":"Viktor H. Koelzer","orcid":"https://orcid.org/0000-0001-9206-4885"},"institutions":[{"id":"https://openalex.org/I2802542264","display_name":"University Hospital of Basel","ror":"https://ror.org/04k51q396","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2802542264"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]},{"id":"https://openalex.org/I4210106471","display_name":"CRUK/MRC Oxford Institute for Radiation Oncology","ror":"https://ror.org/011hz4254","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2801316944","https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210106471","https://openalex.org/I90344618"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Viktor H. Koelzer","raw_affiliation_strings":["Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","Department of Oncology, University of Oxford , Roosevelt Drive , Oxford OX3 7DQ,","Institute of Medical Genetics and Pathology, University Hospital Basel , Sch\u00f6nbeinstrasse 40 , Basel 4031,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational and Translational Pathology Group, Department of Pathology and Molecular Pathology, University Hospital Zurich, University of Z\u00fcrich , Schmelzbergstrasse 12 , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]},{"raw_affiliation_string":"Department of Oncology, University of Oxford , Roosevelt Drive , Oxford OX3 7DQ,","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210106471"]},{"raw_affiliation_string":"Institute of Medical Genetics and Pathology, University Hospital Basel , Sch\u00f6nbeinstrasse 40 , Basel 4031,","institution_ids":["https://openalex.org/I2802542264"]}]},{"author_position":"last","author":{"id":null,"display_name":"Gunnar R\u00e4tsch","orcid":"https://orcid.org/0000-0001-5486-8532"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210100468","display_name":"University Hospital of Zurich","ror":"https://ror.org/01462r250","country_code":"CH","type":"funder","lineage":["https://openalex.org/I4210100468"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gunnar R\u00e4tsch","raw_affiliation_strings":["AI Center, ETH Zurich , Andreasstrasse 5 , Zurich 8092,","Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","University Hospital Zurich Medical Informatics Unit, , Zurich 8091,"],"raw_orcid":"https://orcid.org/0000-0001-5486-8532","affiliations":[{"raw_affiliation_string":"AI Center, ETH Zurich , Andreasstrasse 5 , Zurich 8092,","institution_ids":["https://openalex.org/I202697423","https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Computer Science, ETH Zurich , Universit\u00e4tstrasse 6 , Zurich 8092,","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Amphip\u00f4le, Quartier UNIL-Sorge , Zurich 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University Hospital Zurich Medical Informatics Unit, , Zurich 8091,","institution_ids":["https://openalex.org/I4210100468"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I35440088"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.3553,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.95377977,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"42","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8474000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8474000096321106,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.7979000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.7218999862670898,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6773854494094849},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.6120988726615906},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5861663818359375},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.4611108601093292},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44987407326698303},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.41604042053222656},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.1000453531742096}],"concepts":[{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6773854494094849},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.6120988726615906},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5861663818359375},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.4611108601093292},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44987407326698303},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.41604042053222656},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.1000453531742096},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000098409","descriptor_name":"Representation Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098409","descriptor_name":"Representation Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098409","descriptor_name":"Representation Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000099285","descriptor_name":"Spatial Transcriptomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btag316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag316","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.1101/2024.06.04.24308256","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2024.06.04.24308256","pdf_url":"https://www.medrxiv.org/content/medrxiv/early/2024/06/04/2024.06.04.24308256.full.pdf","source":{"id":"https://openalex.org/S3005729997","display_name":"medRxiv","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"medRxiv","raw_type":"posted-content"},{"id":"pmid:42179160","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42179160","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13371760","is_oa":true,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42179160/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag316","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag316","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4546947540","display_name":"Lymphoid neogenesis in cancer","funder_award_id":"201656","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G8303065118","display_name":"IMPACT - IMproved diagnosis and Personalized treAtment for patients with Chronic Thromboembolic pulmonary hypertension","funder_award_id":"220127","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F3353897962","display_name":"Roche Canada","ror":null},{"id":"https://openalex.org/F4320316261","display_name":"Universit\u00e4tsspital Basel","ror":"https://ror.org/04k51q396"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320321652","display_name":"Eidgen\u00f6ssische Technische Hochschule Z\u00fcrich","ror":"https://ror.org/05a28rw58"},{"id":"https://openalex.org/F4320323874","display_name":"Universit\u00e4t Z\u00fcrich","ror":"https://ror.org/02crff812"},{"id":"https://openalex.org/F4320325738","display_name":"Universit\u00e4tsspital Z\u00fcrich","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1967327758","https://openalex.org/W1967630096","https://openalex.org/W1991488995","https://openalex.org/W2010653277","https://openalex.org/W2014489753","https://openalex.org/W2092286514","https://openalex.org/W2147800946","https://openalex.org/W2149242848","https://openalex.org/W2220812108","https://openalex.org/W2274400037","https://openalex.org/W2282463366","https://openalex.org/W2471536144","https://openalex.org/W2585410541","https://openalex.org/W2763776271","https://openalex.org/W2794284562","https://openalex.org/W2800392236","https://openalex.org/W2899224111","https://openalex.org/W2952391626","https://openalex.org/W2999345636","https://openalex.org/W3021920958","https://openalex.org/W3044030235","https://openalex.org/W3108118546","https://openalex.org/W3122308234","https://openalex.org/W3126958162","https://openalex.org/W3165120573","https://openalex.org/W3171692328","https://openalex.org/W3190202966","https://openalex.org/W3198511950","https://openalex.org/W4214876469","https://openalex.org/W4220675433","https://openalex.org/W4221095552","https://openalex.org/W4226192560","https://openalex.org/W4283704002","https://openalex.org/W4285388882","https://openalex.org/W4306353176","https://openalex.org/W4306406844","https://openalex.org/W4322738920","https://openalex.org/W4388997570","https://openalex.org/W4405447144","https://openalex.org/W4409129472","https://openalex.org/W4413412913","https://openalex.org/W4414194676","https://openalex.org/W4414660901"],"related_works":["https://openalex.org/W2917844847","https://openalex.org/W2036757537","https://openalex.org/W2759085743","https://openalex.org/W2096451653","https://openalex.org/W2952512863","https://openalex.org/W4282930045","https://openalex.org/W3134504629","https://openalex.org/W4238546310","https://openalex.org/W2938696877","https://openalex.org/W4323911413"],"abstract_inverted_index":{"MOTIVATION:":[0],"Spatial":[1],"transcriptomics":[2],"enables":[3],"in-depth":[4],"molecular":[5],"characterization":[6],"of":[7,137],"samples":[8],"on":[9,36,67,83,105],"a":[10,43,89,113,134],"morphology":[11,54],"and":[12,28,53,122,150],"RNA":[13],"level":[14],"while":[15],"preserving":[16],"spatial":[17],"location.":[18],"Integrating":[19],"the":[20,164],"resulting":[21],"multi-modal":[22,135],"data":[23],"is":[24,145,151,166],"an":[25],"unsolved":[26],"problem,":[27],"developing":[29],"new":[30],"solutions":[31],"in":[32,92,116,120,124,147],"precision":[33],"medicine":[34],"depends":[35],"improved":[37,64],"methodologies.":[38],"RESULTS:":[39],"We":[40,79,127],"introduce":[41],"AESTETIK,":[42],"convolutional":[44],"deep":[45],"learning":[46],"model":[47],"that":[48,129],"jointly":[49],"integrates":[50],"spatial,":[51],"transcriptomics,":[52],"information":[55],"to":[56],"learn":[57],"accurate":[58],"spot":[59],"representations.":[60],"AESTETIK":[61,100,144],"yielded":[62],"substantially":[63],"cluster":[65],"assignments":[66],"widely":[68],"adopted":[69],"technology":[70],"platforms":[71],"(e.g.":[72,86],"10x":[73],"Genomics\u2122,":[74],"NanoString\u2122)":[75],"across":[76],"multiple":[77],"datasets.":[78],"achieved":[80],"performance":[81,104],"enhancement":[82],"structured":[84],"tissues":[85,107],"brain)":[87],"with":[88,108],"21%":[90,123],"increase":[91,115],"median":[93],"ARI":[94],"over":[95],"previous":[96],"state-of-the-art":[97],"methods.":[98],"Notably,":[99],"also":[101],"demonstrated":[102],"superior":[103],"cancer":[106],"heterogeneous":[109],"cell":[110],"populations,":[111],"showing":[112],"2-fold":[114],"breast":[117],"cancer,":[118],"79%":[119],"melanoma,":[121],"liver":[125],"cancer.":[126],"expect":[128],"these":[130],"advances":[131],"will":[132],"enable":[133],"understanding":[136],"key":[138],"biological":[139],"processes.":[140],"AVAILABILITY":[141],"AND":[142],"IMPLEMENTATION:":[143],"implemented":[146],"Python":[148],"3":[149],"available":[152,167],"as":[153],"open":[154],"source":[155],"software":[156],"at":[157,168],"http://www.github.com/ratschlab/aestetik.":[158],"The":[159],"Snakemake":[160],"pipeline":[161],"for":[162],"reproducing":[163],"results":[165],"http://www.github.com/ratschlab/st-rep.":[169]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
