{"id":"https://openalex.org/W7160722816","doi":"https://doi.org/10.1093/bioinformatics/btag300","title":"IDAP: an integrated literature- and knowledge-graph-driven evidence prioritization pipeline for precision oncology","display_name":"IDAP: an integrated literature- and knowledge-graph-driven evidence prioritization pipeline for precision oncology","publication_year":2026,"publication_date":"2026-05-01","ids":{"openalex":"https://openalex.org/W7160722816","doi":"https://doi.org/10.1093/bioinformatics/btag300","pmid":"https://pubmed.ncbi.nlm.nih.gov/42105215"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag300","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag300","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5135770695","display_name":"Yebin Ryu","orcid":null},"institutions":[{"id":"https://openalex.org/I103084370","display_name":"Total (France)","ror":"https://ror.org/04sk34n56","country_code":"FR","type":"company","lineage":["https://openalex.org/I103084370"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["FR","KR"],"is_corresponding":false,"raw_author_name":"Yebin Ryu","raw_affiliation_strings":["Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","L-HOPE Program for Community-Based Total Learning Health Systems, Korea University , Seoul, 02841,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"L-HOPE Program for Community-Based Total Learning Health Systems, Korea University , Seoul, 02841,","institution_ids":["https://openalex.org/I103084370"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135789771","display_name":"Haeun Jung","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ha-Eun Jeong","raw_affiliation_strings":["Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","Korea University National Research Laboratory for Convergence Degradation Biology, , Seoul, 02841,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Korea University National Research Laboratory for Convergence Degradation Biology, , Seoul, 02841,","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5135739784","display_name":"Joon-Yong An","orcid":null},"institutions":[{"id":"https://openalex.org/I103084370","display_name":"Total (France)","ror":"https://ror.org/04sk34n56","country_code":"FR","type":"company","lineage":["https://openalex.org/I103084370"]},{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I197347611","display_name":"Korea University","ror":"https://ror.org/047dqcg40","country_code":"KR","type":"education","lineage":["https://openalex.org/I197347611"]},{"id":"https://openalex.org/I4210161052","display_name":"Korea University","ror":"https://ror.org/05m1gnk07","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210161052"]}],"countries":["FR","JP","KR"],"is_corresponding":true,"raw_author_name":"Joon-Yong An","raw_affiliation_strings":["College of Health Science School of Biosystem and Biomedical Science, , Korea University, Seoul, 02841, Republic of Korea","Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","Korea University National Research Laboratory for Convergence Degradation Biology, , Seoul, 02841,","L-HOPE Program for Community-Based Total Learning Health Systems, Korea University , Seoul, 02841,"],"raw_orcid":"https://orcid.org/0000-0001-8839-6297","affiliations":[{"raw_affiliation_string":"College of Health Science School of Biosystem and Biomedical Science, , Korea University, Seoul, 02841, Republic of Korea","institution_ids":["https://openalex.org/I4210161052"]},{"raw_affiliation_string":"Department of Integrated Biomedical and Life Science, Korea University , Seoul, 02841,","institution_ids":["https://openalex.org/I197347611"]},{"raw_affiliation_string":"Korea University National Research Laboratory for Convergence Degradation Biology, , Seoul, 02841,","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"L-HOPE Program for Community-Based Total Learning Health Systems, Korea University , Seoul, 02841,","institution_ids":["https://openalex.org/I103084370"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5135739784"],"corresponding_institution_ids":["https://openalex.org/I103084370","https://openalex.org/I139264467","https://openalex.org/I197347611","https://openalex.org/I4210161052"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.62004258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3091000020503998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.3091000020503998,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.28439998626708984,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.15060000121593475,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.711899995803833},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6794000267982483},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5284000039100647},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.47929999232292175},{"id":"https://openalex.org/keywords/triage","display_name":"Triage","score":0.42750000953674316},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.4259999990463257},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.3928999900817871}],"concepts":[{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.711899995803833},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6794000267982483},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6438000202178955},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5284000039100647},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.47929999232292175},{"id":"https://openalex.org/C2777120189","wikidata":"https://www.wikidata.org/wiki/Q780067","display_name":"Triage","level":2,"score":0.42750000953674316},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.4259999990463257},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.3928999900817871},{"id":"https://openalex.org/C3020497934","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision oncology","level":3,"score":0.38679999113082886},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.37790000438690186},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.3625999987125397},{"id":"https://openalex.org/C2780148112","wikidata":"https://www.wikidata.org/wiki/Q1432581","display_name":"Proxy (statistics)","level":2,"score":0.33869999647140503},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33469998836517334},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33379998803138733},{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.32670000195503235},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32260000705718994},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.3163999915122986},{"id":"https://openalex.org/C19648533","wikidata":"https://www.wikidata.org/wiki/Q691640","display_name":"Evidence-based medicine","level":3,"score":0.289900004863739},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.28360000252723694},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.273499995470047},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.25780001282691956}],"mesh":[{"descriptor_ui":"D000096104","descriptor_name":"Biocuration","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057285","descriptor_name":"Precision Medicine","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag300","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:42105215","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42105215","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13197120","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13197120/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag300","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag300","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5042707920074463,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1866764127","display_name":null,"funder_award_id":"RS-2025-16652968","funder_id":"https://openalex.org/F4320320671","funder_display_name":"National Research Foundation"},{"id":"https://openalex.org/G4377333866","display_name":null,"funder_award_id":"RS-2025-16652968","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320321373","display_name":"Korea University","ror":"https://ror.org/047dqcg40"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320328359","display_name":"Ministry of Science and ICT, South Korea","ror":"https://ror.org/01wpjm123"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1976402300","https://openalex.org/W1993595811","https://openalex.org/W2000853637","https://openalex.org/W2120712387","https://openalex.org/W2128752873","https://openalex.org/W2158485828","https://openalex.org/W2161375781","https://openalex.org/W2200963198","https://openalex.org/W2606495925","https://openalex.org/W2613362156","https://openalex.org/W2614443510","https://openalex.org/W2781914479","https://openalex.org/W2796153844","https://openalex.org/W2799711263","https://openalex.org/W2921564361","https://openalex.org/W3014707956","https://openalex.org/W3136653115","https://openalex.org/W4308957884","https://openalex.org/W4385796110","https://openalex.org/W4388455891","https://openalex.org/W4390587266","https://openalex.org/W4402827768","https://openalex.org/W4404225840","https://openalex.org/W4404641905"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"Advances":[1],"in":[2,40,232,281],"tumor":[3],"sequencing":[4],"enable":[5],"routine":[6],"detection":[7],"of":[8,12,168,277],"dozens":[9],"to":[10,24,63,248],"hundreds":[11],"somatic":[13],"alterations":[14],"per":[15],"patient,":[16],"yet":[17],"only":[18],"a":[19,79,104,116,120,166],"minority":[20],"can":[21,55],"be":[22],"linked":[23],"established":[25],"therapeutic":[26,65,131,152],"evidence.":[27],"Curated":[28],"resources":[29],"such":[30],"as":[31],"OncoKB":[32,161],"provide":[33],"high-quality":[34],"variant-drug":[35,89],"annotations":[36],"but":[37],"remain":[38],"limited":[39],"coverage,":[41],"particularly":[42],"for":[43,67,189],"rare":[44],"or":[45],"low-frequency":[46],"variants.":[47],"This":[48],"coverage":[49],"gap":[50],"motivates":[51],"computational":[52],"frameworks":[53],"that":[54,82],"integrate":[56],"curated,":[57],"literature-derived,":[58],"graph-based,":[59],"and":[60,109,119,136,194,212,252],"clinical-trial":[61,111],"evidence":[62,86,112,134,210,250],"prioritize":[64],"hypotheses":[66,153],"expert":[68],"review.":[69],"RESULTS:":[70],"We":[71],"developed":[72],"the":[73,179,240,278],"Integrated":[74],"Drug":[75],"Annotation":[76],"Pipeline":[77],"(IDAP),":[78],"modular":[80],"framework":[81],"combines":[83],"four":[84],"complementary":[85],"streams:":[87],"curated":[88,155,190],"associations":[90],"from":[91,97,113],"OncoKB,":[92],"literature-derived":[93],"gene-drug":[94],"mention":[95],"counts":[96],"PubMed":[98],"abstracts,":[99],"graph-based":[100],"drug":[101],"prioritization":[102],"using":[103],"TxGNN-derived":[105],"biomedical":[106],"knowledge":[107],"graph,":[108],"cancer-specific":[110],"ClinicalTrials.gov.":[114],"Given":[115],"cancer":[117,143],"type":[118],"MAF":[121],"file,":[122],"IDAP":[123,149,164,224,263],"generates":[124],"patient-level":[125],"reports":[126],"summarizing":[127],"detected":[128],"variants,":[129],"ranked":[130],"hypotheses,":[132],"supporting":[133],"layers,":[135],"relevant":[137],"clinical":[138],"trials.":[139],"Evaluated":[140],"across":[141],"five":[142],"types":[144],"(n":[145],"=":[146],"50":[147],"samples),":[148],"expanded":[150],"evidence-linked":[151],"beyond":[154],"databases":[156],"alone.":[157],"Among":[158],"patients":[159],"without":[160],"recommendations":[162],"(26/50),":[163],"identified":[165],"median":[167],"87":[169],"candidate":[170],"drugs":[171],"(range:":[172],"2-473).":[173],"To":[174],"reduce":[175],"cross-source":[176],"scale":[177],"imbalance,":[178],"final":[180],"ranking":[181],"used":[182,280],"within-sample":[183],"percentile":[184],"normalization":[185],"with":[186,236,269],"fixed":[187],"bonuses":[188],"evidence,":[191],"multi-source":[192],"support,":[193],"trial":[195],"linkage.":[196],"Under":[197],"this":[198,282],"revised":[199],"ranking,":[200],"24/50":[201],"top-ranked":[202],"candidates":[203],"were":[204],"supported":[205],"by":[206],"at":[207,226,267,272],"least":[208,227],"two":[209],"sources":[211],"44/50":[213],"had":[214],"associated":[215],"ClinicalTrials":[216],"metadata.":[217],"In":[218],"an":[219],"exploratory":[220],"external":[221],"CIViC":[222],"comparison,":[223],"recovered":[225],"one":[228],"matched":[229],"CIViC-supported":[230],"therapy":[231],"28/41":[233],"eligible":[234],"samples,":[235],"13/41":[237],"appearing":[238],"within":[239],"top":[241],"10":[242],"candidates.":[243],"These":[244],"outputs":[245],"are":[246],"intended":[247],"support":[249],"triage":[251],"translational":[253],"interpretation":[254],"rather":[255],"than":[256],"direct":[257],"treatment":[258],"recommendation.":[259],"AVAILABILITY":[260],"AND":[261],"IMPLEMENTATION:":[262],"is":[264,284],"freely":[265],"available":[266],"https://github.com/joonan-lab/IDAP-pipeline,":[268],"full":[270],"documentation":[271],"https://joonan-lab.github.io/IDAP-pipeline.":[273],"An":[274],"archived":[275],"snapshot":[276],"code":[279],"study":[283],"deposited":[285],"on":[286],"Zenodo":[287],"(DOI:":[288],"https://doi.org/10.5281/zenodo.19301367).":[289]},"counts_by_year":[],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2026-05-10T00:00:00"}
