{"id":"https://openalex.org/W7140712226","doi":"https://doi.org/10.1093/bioinformatics/btag144","title":"GRNFormer: accurate gene regulatory network inference using graph transformer","display_name":"GRNFormer: accurate gene regulatory network inference using graph transformer","publication_year":2026,"publication_date":"2026-03-23","ids":{"openalex":"https://openalex.org/W7140712226","doi":"https://doi.org/10.1093/bioinformatics/btag144","pmid":"https://pubmed.ncbi.nlm.nih.gov/41883144"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag144","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag144","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109694046","display_name":"Akshata Hegde","orcid":"https://orcid.org/0009-0009-7077-9420"},"institutions":[{"id":"https://openalex.org/I2800649613","display_name":"University of Missouri Health System","ror":"https://ror.org/03yp8z857","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800649613"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Akshata Hegde","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, Missouri, 65211,","Roy Blunt Nextgen Precision Health, University of Missouri , Columbia, Missouri, 65211,"],"raw_orcid":"https://orcid.org/0009-0009-7077-9420","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, Missouri, 65211,","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Roy Blunt Nextgen Precision Health, University of Missouri , Columbia, Missouri, 65211,","institution_ids":["https://openalex.org/I2800649613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044354277","display_name":"Jianlin Cheng","orcid":"https://orcid.org/0000-0003-0305-2853"},"institutions":[{"id":"https://openalex.org/I2800649613","display_name":"University of Missouri Health System","ror":"https://ror.org/03yp8z857","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2800649613"]},{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jianlin Cheng","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, Missouri, 65211,","Roy Blunt Nextgen Precision Health, University of Missouri , Columbia, Missouri, 65211,"],"raw_orcid":"https://orcid.org/0000-0003-0305-2853","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, University of Missouri , Columbia, Missouri, 65211,","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Roy Blunt Nextgen Precision Health, University of Missouri , Columbia, Missouri, 65211,","institution_ids":["https://openalex.org/I2800649613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5044354277"],"corresponding_institution_ids":["https://openalex.org/I2800649613","https://openalex.org/I76835614"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":6.6809,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.9582662,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"42","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.699400007724762,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.699400007724762,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.186599999666214,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.01769999973475933,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7628999948501587},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5691999793052673},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5683000087738037},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5421000123023987},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.32350000739097595},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3077000081539154}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7660999894142151},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7628999948501587},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5691999793052673},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5683000087738037},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5421000123023987},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4805999994277954},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33719998598098755},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.32350000739097595},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3077000081539154},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.303600013256073},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.302700012922287},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.29670000076293945},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2937000095844269},{"id":"https://openalex.org/C3746660","wikidata":"https://www.wikidata.org/wiki/Q1068763","display_name":"Rule of inference","level":2,"score":0.27079999446868896},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.26269999146461487},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.2574000060558319},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.25690001249313354}],"mesh":[{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098446","descriptor_name":"Autoencoder","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag144","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41883144","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41883144","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13069479","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13069479/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag144","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag144","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6182800531387329,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"awards":[{"id":"https://openalex.org/G3266146973","display_name":null,"funder_award_id":"DE-SC0026121","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1486455950","https://openalex.org/W1911090860","https://openalex.org/W1964609270","https://openalex.org/W1994088950","https://openalex.org/W2021957728","https://openalex.org/W2025825535","https://openalex.org/W2032387926","https://openalex.org/W2044525257","https://openalex.org/W2058588625","https://openalex.org/W2088990880","https://openalex.org/W2090165362","https://openalex.org/W2105129830","https://openalex.org/W2109384743","https://openalex.org/W2140158840","https://openalex.org/W2153484735","https://openalex.org/W2159675211","https://openalex.org/W2163296115","https://openalex.org/W2541088566","https://openalex.org/W2757234574","https://openalex.org/W2774439418","https://openalex.org/W2800392236","https://openalex.org/W2926010705","https://openalex.org/W2944545583","https://openalex.org/W2951424836","https://openalex.org/W2951850020","https://openalex.org/W2974274234","https://openalex.org/W2996140569","https://openalex.org/W2997831639","https://openalex.org/W3152893301","https://openalex.org/W3158147480","https://openalex.org/W3187966659","https://openalex.org/W4226018745","https://openalex.org/W4290930137","https://openalex.org/W4308834893","https://openalex.org/W4321452549","https://openalex.org/W4362460300","https://openalex.org/W4388870182","https://openalex.org/W4392231300","https://openalex.org/W4399784743","https://openalex.org/W4399977687","https://openalex.org/W4405693525","https://openalex.org/W4408997955","https://openalex.org/W4409570092"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"Deciphering":[1],"gene":[2,70,107],"regulatory":[3,63,108,175],"networks":[4],"(GRNs)":[5],"from":[6,48,110],"single-cell":[7,112],"transcriptomics":[8,49],"data":[9,21,50],"remains":[10],"a":[11,39,68,75,98,214],"fundamental":[12],"challenge":[13],"in":[14,132,180,190,234],"computational":[15],"biology.":[16,221],"It":[17],"is":[18,226,237],"hindered":[19],"by":[20],"sparsity,":[22],"high":[23],"dimensionality,":[24],"and":[25,55,91,127,146,157,173,186,209,216],"the":[26,86,140,150,231],"lack":[27],"of":[28,88],"scalable,":[29,199],"generalizable":[30,40],"inference":[31,47,203],"models.":[32],"To":[33],"address":[34],"this,":[35],"we":[36],"present":[37],"GRNFormer,":[38],"graph":[41,77],"transformer":[42],"framework":[43],"for":[44,219,245],"accurate":[45],"GRN":[46,202],"across":[51,204],"species,":[52,210],"cell":[53,188,207],"types,":[54,208],"platforms":[56],"without":[57],"requiring":[58],"cell-type":[59],"annotations":[60],"or":[61,113],"prior":[62],"information.":[64],"RESULTS:":[65],"GRNFormer":[66,123,212,225],"integrates":[67],"transformer-based":[69],"expression":[71],"encoder":[72],"(Gene-Transcoder)":[73],"with":[74,242],"variational":[76],"autoencoder":[78],"(GraViTAE)":[79],"employing":[80],"pairwise":[81],"attention":[82],"to":[83],"jointly":[84],"learn":[85],"representations":[87],"genes":[89],"(nodes)":[90],"their":[92],"co-expression":[93],"relationships":[94],"(edges).":[95],"Leveraging":[96],"TF-Walker,":[97],"transcription":[99],"factor-anchored":[100],"subgraph":[101],"sampling":[102],"strategy,":[103],"it":[104],"effectively":[105],"captures":[106],"interactions":[109],"either":[111],"bulk":[114],"RNA-seq":[115],"datasets.":[116],"Benchmarking":[117],"on":[118,228,239],"standard":[119],"datasets":[120],"demonstrates":[121],"that":[122],"outperforms":[124],"existing":[125],"traditional":[126],"deep":[128],"learning":[129],"state-of-the-art":[130],"methods":[131],"blind":[133],"evaluations,":[134],"achieving":[135],"average":[136,163],"sampled":[137,147,164],"area":[138,148],"under":[139,149],"receiver":[141],"operating":[142],"characteristic":[143],"curve":[144,152],"(Sampled_AUROC)":[145],"precision-recall":[151],"(Sampled_AUPRC)":[153],"values":[154],"between":[155],"0.90":[156],"0.98":[158],"as":[159,161,213],"well":[160],"0.87-0.98":[162],"F1":[165],"score.":[166],"The":[167,196],"model":[168],"robustly":[169],"recovers":[170],"both":[171],"known":[172],"novel":[174],"networks,":[176],"including":[177],"pluripotency":[178],"circuits":[179],"human":[181],"embryonic":[182],"stem":[183],"cells":[184,194],"(hESCs)":[185],"immune":[187],"modules":[189],"peripheral":[191],"blood":[192],"mononuclear":[193],"(PBMCs).":[195],"architecture":[197],"enables":[198],"biologically":[200],"interpretable":[201],"various":[205],"datasets,":[206],"establishing":[211],"robust":[215],"transferable":[217],"tool":[218],"network":[220],"AVAILABILITY":[222],"AND":[223],"IMPLEMENTATION:":[224],"available":[227],"GitHub":[229],"(https://github.com/BioinfoMachineLearning/GRNformer);":[230],"version":[232],"used":[233],"this":[235],"work":[236],"archived":[238],"Zenodo":[240],"(https://doi.org/10.5281/zenodo.18868395),":[241],"evaluation":[243],"resources":[244],"reproducibility.":[246]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2026-03-27T00:00:00"}
