{"id":"https://openalex.org/W7134912359","doi":"https://doi.org/10.1093/bioinformatics/btag109","title":"Predicting antibody\u2013antigen affinity with a dual-level representation model","display_name":"Predicting antibody\u2013antigen affinity with a dual-level representation model","publication_year":2026,"publication_date":"2026-03-04","ids":{"openalex":"https://openalex.org/W7134912359","doi":"https://doi.org/10.1093/bioinformatics/btag109","pmid":"https://pubmed.ncbi.nlm.nih.gov/41808445"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag109","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag109","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5121245326","display_name":"Ziyang Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyang Wang","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":"https://orcid.org/0000-0003-1656-0638","affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yu Zhang","orcid":"https://orcid.org/0009-0001-1816-9539"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":"https://orcid.org/0009-0001-1816-9539","affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067842712","display_name":"Yu Shrike Zhang","orcid":"https://orcid.org/0000-0002-0045-0808"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Youli Zhang","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jianwei Huang","orcid":"https://orcid.org/0009-0009-8629-9229"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianwei Huang","raw_affiliation_strings":["Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":"https://orcid.org/0009-0009-8629-9229","affiliations":[{"raw_affiliation_string":"Institute of Artificial Intelligence, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121260445","display_name":"Xiaoli Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]},{"id":"https://openalex.org/I75867142","display_name":"Xiamen University of Technology","ror":"https://ror.org/01285e189","country_code":"CN","type":"education","lineage":["https://openalex.org/I75867142"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Lu","raw_affiliation_strings":["Information and Networking Center, Xiamen University, Xiamen, 361102, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Networking Center, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505","https://openalex.org/I75867142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090466533","display_name":"Xiaoping Min","orcid":"https://orcid.org/0000-0002-0817-0878"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaoping Min","raw_affiliation_strings":["School of Informatics, Xiamen University, Xiamen, 361102, China","State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Informatics, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]},{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128743694","display_name":"Shengxiang Ge","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shengxiang Ge","raw_affiliation_strings":["State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128755808","display_name":"Jun Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Zhang","raw_affiliation_strings":["State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":"https://orcid.org/0000-0002-6601-9180","affiliations":[{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078732636","display_name":"Ningshao Xia","orcid":"https://orcid.org/0000-0003-0179-5266"},"institutions":[{"id":"https://openalex.org/I191208505","display_name":"Xiamen University","ror":"https://ror.org/00mcjh785","country_code":"CN","type":"education","lineage":["https://openalex.org/I191208505"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ningshao Xia","raw_affiliation_strings":["State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Vaccines for Infectious Diseases, Xiang An Biomedicine Laboratory, School of Public Health; National Institute of Diagnostics and Vaccine Development in Infectious Diseases; National Innovation Platform for Industry-Education Integration in Vaccine Research; NMPA Key Laboratory for Research and Evaluation of Infectious Disease Diagnostic Technology, Xiamen University, Xiamen, 361102, China","institution_ids":["https://openalex.org/I191208505"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5078732636","https://openalex.org/A5090466533","https://openalex.org/A5128743694"],"corresponding_institution_ids":["https://openalex.org/I191208505"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.1237,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.93354848,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"42","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4309999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.4309999942779541,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.3905999958515167,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.02930000051856041,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6265000104904175},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3741999864578247},{"id":"https://openalex.org/keywords/external-data-representation","display_name":"External Data Representation","score":0.3109000027179718},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.2867000102996826}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6705999970436096},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6265000104904175},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42289999127388},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.40880000591278076},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3741999864578247},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.366100013256073},{"id":"https://openalex.org/C116409475","wikidata":"https://www.wikidata.org/wiki/Q1385056","display_name":"External Data Representation","level":2,"score":0.3109000027179718},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2867000102996826},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.26489999890327454},{"id":"https://openalex.org/C2781170535","wikidata":"https://www.wikidata.org/wiki/Q30587856","display_name":"Noisy data","level":2,"score":0.25099998712539673}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000906","descriptor_name":"Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000915","descriptor_name":"Antibody Affinity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000937","descriptor_name":"Antigen-Antibody Reactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000941","descriptor_name":"Antigens","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D061905","descriptor_name":"Single-Domain Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D061905","descriptor_name":"Single-Domain Antibodies","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D061905","descriptor_name":"Single-Domain Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D061905","descriptor_name":"Single-Domain Antibodies","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag109","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41808445","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41808445","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13070686","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13070686/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag109","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag109","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.5678659081459045,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G180272644","display_name":null,"funder_award_id":"2021ZD01006","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3638773276","display_name":null,"funder_award_id":"2021ZD01006","funder_id":"https://openalex.org/F4320328318","funder_display_name":"Fujian Provincial Health Commission"},{"id":"https://openalex.org/G4479902835","display_name":null,"funder_award_id":"20720250004","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G5570595420","display_name":null,"funder_award_id":"62272399","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7298893170","display_name":null,"funder_award_id":"U24A20742","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320328318","display_name":"Fujian Provincial Health Commission","ror":null},{"id":"https://openalex.org/F4320329860","display_name":"National Science and Technology Major Project","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2071811516","https://openalex.org/W2087064593","https://openalex.org/W2152869198","https://openalex.org/W2283896596","https://openalex.org/W2901953282","https://openalex.org/W2956569764","https://openalex.org/W3104783716","https://openalex.org/W3131296454","https://openalex.org/W3146944767","https://openalex.org/W4205773061","https://openalex.org/W4280625391","https://openalex.org/W4283068487","https://openalex.org/W4321369743","https://openalex.org/W4327550249","https://openalex.org/W4385879990","https://openalex.org/W4386976834","https://openalex.org/W4388024559","https://openalex.org/W4396721167","https://openalex.org/W4397293886","https://openalex.org/W4400344219","https://openalex.org/W4401715999","https://openalex.org/W4403782367","https://openalex.org/W4405079398","https://openalex.org/W4406440058"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"Protein":[1],"language":[2,90],"models":[3],"are":[4,22,139],"critical":[5],"for":[6,51,60,124,137],"modeling":[7],"antibody-antigen":[8],"interactions,":[9],"yet":[10],"sequence-based":[11,62,125],"affinity":[12,52,63,127],"prediction":[13,53],"remains":[14],"a":[15,55,87,121],"key":[16],"challenge,":[17],"particularly":[18],"when":[19],"structural":[20],"data":[21],"scarce.":[23],"Existing":[24],"methods":[25],"often":[26],"struggle":[27],"to":[28,71,81,108],"fully":[29],"exploit":[30],"sequence":[31],"information,":[32],"limiting":[33],"their":[34],"applicability":[35],"across":[36],"diverse":[37],"antibody":[38,126],"formats":[39],"such":[40],"as":[41],"single-domain":[42],"antibodies":[43],"(sdAbs).":[44],"RESULTS:":[45],"We":[46],"propose":[47],"dual-level":[48,56],"protein":[49,84,89],"representation":[50],"(DLP-Affinity),":[54],"deep":[57],"learning":[58],"framework":[59],"accurate":[61],"prediction.":[64,128],"It":[65],"leverages":[66],"two":[67],"complementary":[68],"modules:":[69],"residue-to-residue":[70],"capture":[72],"local":[73],"interface":[74],"contacts,":[75],"and":[76,110,135,144],"global":[77,83],"stochastic":[78],"projection":[79],"embedding":[80],"represent":[82],"properties.":[85],"Utilizing":[86],"fine-tuned":[88],"model,":[91],"our":[92],"approach":[93],"achieves":[94],"state-of-the-art":[95],"performance":[96],"on":[97,115,146],"the":[98,116],"general":[99],"AB-Bind":[100],"dataset":[101],"(reducing":[102],"mean":[103],"absolute":[104],"error":[105],"by":[106],"up":[107],"20.9%)":[109],"delivers":[111],"highly":[112],"competitive":[113],"results":[114],"sdAb-DB":[117],"dataset.":[118],"This":[119],"provides":[120],"robust":[122],"tool":[123],"AVAILABILITY":[129],"AND":[130],"IMPLEMENTATION:":[131],"The":[132],"source":[133],"code":[134],"datasets":[136],"DLP-Affinity":[138],"freely":[140],"available":[141],"at":[142,148],"https://github.com/Zy-Wang-bit/DLP_Affinity":[143],"archived":[145],"Zenodo":[147],"https://doi.org/10.5281/zenodo.18437656.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-12T07:33:03.550515","created_date":"2026-03-12T00:00:00"}
