{"id":"https://openalex.org/W7131655011","doi":"https://doi.org/10.1093/bioinformatics/btag096","title":"<i>CERTOMICS</i> : trusted single-cell multiomics pipeline for high-resolution profiling of adoptive cellular immunotherapies","display_name":"<i>CERTOMICS</i> : trusted single-cell multiomics pipeline for high-resolution profiling of adoptive cellular immunotherapies","publication_year":2026,"publication_date":"2026-02-24","ids":{"openalex":"https://openalex.org/W7131655011","doi":"https://doi.org/10.1093/bioinformatics/btag096","pmid":"https://pubmed.ncbi.nlm.nih.gov/41741362"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag096","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag096","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074232935","display_name":"Christina Katharina Kuhn","orcid":"https://orcid.org/0000-0001-6705-9048"},"institutions":[{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christina Katharina Kuhn","raw_affiliation_strings":["Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","institution_ids":["https://openalex.org/I4210107844"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102757312","display_name":"David Schmidt","orcid":"https://orcid.org/0000-0002-3779-6765"},"institutions":[{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"David Schmidt","raw_affiliation_strings":["Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","institution_ids":["https://openalex.org/I4210107844"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041810680","display_name":"Michael Rade","orcid":"https://orcid.org/0000-0001-6247-9289"},"institutions":[{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Rade","raw_affiliation_strings":["Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","institution_ids":["https://openalex.org/I4210107844"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120099568","display_name":"Josephine Selke","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Josephine Selke","raw_affiliation_strings":["Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126942439","display_name":"U Sandy Tretbar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"U Sandy Tretbar","raw_affiliation_strings":["Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,"],"affiliations":[{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","institution_ids":["https://openalex.org/I4210107844"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090197729","display_name":"Maximilian Merz","orcid":"https://orcid.org/0000-0002-2805-5973"},"institutions":[{"id":"https://openalex.org/I1334819555","display_name":"Memorial Sloan Kettering Cancer Center","ror":"https://ror.org/02yrq0923","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1334819555"]},{"id":"https://openalex.org/I4210125843","display_name":"University Hospital Leipzig","ror":"https://ror.org/028hv5492","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210125843"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Maximilian Merz","raw_affiliation_strings":["Cancer Center Central Germany (CCCG) Leipzig-Jena, University Hospital of Leipzig , Leipzig 04103,","Department of Hematology, Cell Therapy and Hemostaseology, University Hospital of Leipzig , Leipzig 04103,","Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Myeloma Service, Memorial Sloan Kettering Cancer Center , New York, NY 10065,"],"affiliations":[{"raw_affiliation_string":"Cancer Center Central Germany (CCCG) Leipzig-Jena, University Hospital of Leipzig , Leipzig 04103,","institution_ids":["https://openalex.org/I4210125843"]},{"raw_affiliation_string":"Department of Hematology, Cell Therapy and Hemostaseology, University Hospital of Leipzig , Leipzig 04103,","institution_ids":["https://openalex.org/I4210125843"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Myeloma Service, Memorial Sloan Kettering Cancer Center , New York, NY 10065,","institution_ids":["https://openalex.org/I1334819555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126883008","display_name":"Jan Grau","orcid":null},"institutions":[{"id":"https://openalex.org/I2801009184","display_name":"Luther University","ror":"https://ror.org/015dhy417","country_code":"KR","type":"education","lineage":["https://openalex.org/I2801009184"]},{"id":"https://openalex.org/I68956291","display_name":"Martin Luther University Halle-Wittenberg","ror":"https://ror.org/05gqaka33","country_code":"DE","type":"education","lineage":["https://openalex.org/I68956291"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Jan Grau","raw_affiliation_strings":["Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale) 06099,"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Martin Luther University Halle-Wittenberg , Halle (Saale) 06099,","institution_ids":["https://openalex.org/I68956291","https://openalex.org/I2801009184"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5122323860","display_name":"Kristin Reiche","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210115111","display_name":"University of Arts and Industrial Design Linz","ror":"https://ror.org/02as55378","country_code":"AT","type":"education","lineage":["https://openalex.org/I4210115111"]},{"id":"https://openalex.org/I4210125843","display_name":"University Hospital Leipzig","ror":"https://ror.org/028hv5492","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210125843"]},{"id":"https://openalex.org/I4210145647","display_name":"Fraunhofer Institute for Cell Therapy and Immunology","ror":"https://ror.org/04x45f476","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210145647","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164862","display_name":"Artificial Intelligence in Medicine (Canada)","ror":"https://ror.org/05p590m36","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210164862"]}],"countries":["AT","CA","DE"],"is_corresponding":false,"raw_author_name":"Kristin Reiche","raw_affiliation_strings":["Cancer Center Central Germany (CCCG) Leipzig-Jena, University Hospital of Leipzig , Leipzig 04103,","Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) , Leipzig 04105,","Department of Hematology, Cell Therapy and Hemostaseology, University Hospital of Leipzig , Leipzig 04103,","Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","Interdisciplinary Transformation University IT:U, Linz 4020, Austria"],"affiliations":[{"raw_affiliation_string":"Cancer Center Central Germany (CCCG) Leipzig-Jena, University Hospital of Leipzig , Leipzig 04103,","institution_ids":["https://openalex.org/I4210125843"]},{"raw_affiliation_string":"Center for Scalable Data Analytics and Artificial Intelligence (ScaDS.AI) , Leipzig 04105,","institution_ids":["https://openalex.org/I4210164862"]},{"raw_affiliation_string":"Department of Hematology, Cell Therapy and Hemostaseology, University Hospital of Leipzig , Leipzig 04103,","institution_ids":["https://openalex.org/I4210125843"]},{"raw_affiliation_string":"Department of Medical Bioinformatics, Fraunhofer Institute for Cell Therapy and Immunology IZI , Leipzig 04103,","institution_ids":["https://openalex.org/I4210145647"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence Immune-Mediated Diseases , Leipzig 04103,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Interdisciplinary Transformation University IT:U, Linz 4020, Austria","institution_ids":["https://openalex.org/I4210115111"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5074232935"],"corresponding_institution_ids":["https://openalex.org/I4210107844","https://openalex.org/I4210145647"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.51260258,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11491","display_name":"CAR-T cell therapy research","score":0.9861999750137329,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.8131999969482422},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7055000066757202},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4555000066757202},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.3422999978065491}],"concepts":[{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.8131999969482422},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7487000226974487},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7055000066757202},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4555000066757202},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4311999976634979},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.3422999978065491},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30880001187324524},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3066999912261963},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.2680000066757202},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2547999918460846}],"mesh":[{"descriptor_ui":"D000076962","descriptor_name":"Receptors, Chimeric Antigen","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000076962","descriptor_name":"Receptors, Chimeric Antigen","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000076962","descriptor_name":"Receptors, Chimeric Antigen","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016130","descriptor_name":"Immunophenotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016130","descriptor_name":"Immunophenotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016130","descriptor_name":"Immunophenotyping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016219","descriptor_name":"Immunotherapy, Adoptive","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btag096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag096","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41741362","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41741362","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/508916","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/508916","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13008325","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13008325/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag096","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag096","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1771707855","display_name":null,"funder_award_id":"853988","funder_id":"https://openalex.org/F4320314178","funder_display_name":"European Federation of Pharmaceutical Industries and Associations"},{"id":"https://openalex.org/G1811564070","display_name":null,"funder_award_id":"DJCLS 08 R_2023","funder_id":"https://openalex.org/F4320323359","funder_display_name":"Jos\u00e9 Carreras Leuk\u00e4mie-Stiftung"},{"id":"https://openalex.org/G2662632475","display_name":null,"funder_award_id":"08 R/2023","funder_id":"https://openalex.org/F4320323359","funder_display_name":"Jos\u00e9 Carreras Leuk\u00e4mie-Stiftung"},{"id":"https://openalex.org/G2736624934","display_name":null,"funder_award_id":"T2EVOLVE","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4712284355","display_name":null,"funder_award_id":"57616814","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G4970889947","display_name":null,"funder_award_id":"101136379","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5016914395","display_name":null,"funder_award_id":"SECAI","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G5477300162","display_name":"Immune Safety Avatar: nonclinical mimicking of the immune system effects of immunomodulatory therapies","funder_award_id":"853988","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6777017359","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320320875","funder_display_name":"Deutscher Akademischer Austauschdienst"},{"id":"https://openalex.org/G7244015425","display_name":null,"funder_award_id":"945393","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320310820","display_name":"Juvenile Diabetes Research Foundation United States of America","ror":"https://ror.org/00vqxjy61"},{"id":"https://openalex.org/F4320314178","display_name":"European Federation of Pharmaceutical Industries and Associations","ror":"https://ror.org/00g1x4v36"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320875","display_name":"Deutscher Akademischer Austauschdienst","ror":"https://ror.org/039djdh30"},{"id":"https://openalex.org/F4320323359","display_name":"Jos\u00e9 Carreras Leuk\u00e4mie-Stiftung","ror":"https://ror.org/00826gz80"},{"id":"https://openalex.org/F4320331321","display_name":"Hector Stiftung","ror":"https://ror.org/0427ycx88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Detailed":[0],"documentation":[1],"of":[2],"this":[3,23],"pipeline,":[4],"along":[5],"with":[6],"a":[7],"resource":[8],"on":[9,16,27,36],"latest":[10],"FDA-approved":[11],"CAR":[12],"therapies":[13],"is":[14,33],"available":[15,26],"our":[17],"website:":[18],"https://fraunhofer-izi.github.io/Living-Drugs-Wiki/.":[19],"The":[20,31],"data":[21],"underlying":[22],"article":[24],"are":[25],"GitHub":[28],"at":[29,38],"https://github.com/fraunhofer-izi/CERTOMICS.":[30],"code":[32],"also":[34],"published":[35],"Zenodo":[37],"https://doi.org/10.5281/zenodo.18709693.":[39]},"counts_by_year":[],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2026-02-27T00:00:00"}
