{"id":"https://openalex.org/W7129054078","doi":"https://doi.org/10.1093/bioinformatics/btag070","title":"moiraine: an R package to construct reproducible pipelines for the application and comparison of multi-omics integration methods","display_name":"moiraine: an R package to construct reproducible pipelines for the application and comparison of multi-omics integration methods","publication_year":2026,"publication_date":"2026-02-10","ids":{"openalex":"https://openalex.org/W7129054078","doi":"https://doi.org/10.1093/bioinformatics/btag070","pmid":"https://pubmed.ncbi.nlm.nih.gov/41692950"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag070","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag070","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066169187","display_name":"Olivia Angelin\u2010Bonnet","orcid":"https://orcid.org/0000-0002-7708-2919"},"institutions":[{"id":"https://openalex.org/I4210143403","display_name":"Norwegian Institute of Bioeconomy Research","ror":"https://ror.org/04aah1z61","country_code":"NO","type":"funder","lineage":["https://openalex.org/I4210143403"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Olivia Angelin-Bonnet","raw_affiliation_strings":["Data Science, Bioeconomy Science Institute , Palmerston North 4442,"],"affiliations":[{"raw_affiliation_string":"Data Science, Bioeconomy Science Institute , Palmerston North 4442,","institution_ids":["https://openalex.org/I4210143403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126097670","display_name":"Lindy Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143403","display_name":"Norwegian Institute of Bioeconomy Research","ror":"https://ror.org/04aah1z61","country_code":"NO","type":"funder","lineage":["https://openalex.org/I4210143403"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lindy Guo","raw_affiliation_strings":["Data Science, Bioeconomy Science Institute , Auckland 1142,"],"affiliations":[{"raw_affiliation_string":"Data Science, Bioeconomy Science Institute , Auckland 1142,","institution_ids":["https://openalex.org/I4210143403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041015145","display_name":"Roy Storey","orcid":"https://orcid.org/0000-0003-1375-7136"},"institutions":[{"id":"https://openalex.org/I4210149518","display_name":"Bioinstitut","ror":"https://ror.org/05s7vvm14","country_code":"CZ","type":"nonprofit","lineage":["https://openalex.org/I4210149518"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Roy Storey","raw_affiliation_strings":["Kiwifruit New Cultivars, Bioeconomy Science Institute , Te Puke 3182,"],"affiliations":[{"raw_affiliation_string":"Kiwifruit New Cultivars, Bioeconomy Science Institute , Te Puke 3182,","institution_ids":["https://openalex.org/I4210149518"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5126105567","display_name":"Susan Thomson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210143403","display_name":"Norwegian Institute of Bioeconomy Research","ror":"https://ror.org/04aah1z61","country_code":"NO","type":"funder","lineage":["https://openalex.org/I4210143403"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Susan Thomson","raw_affiliation_strings":["Molecular & Digital Breeding, Bioeconomy Science Institute , Christchurch 8140,"],"affiliations":[{"raw_affiliation_string":"Molecular & Digital Breeding, Bioeconomy Science Institute , Christchurch 8140,","institution_ids":["https://openalex.org/I4210143403"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5066169187"],"corresponding_institution_ids":["https://openalex.org/I4210143403"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.51109802,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.40139999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.40139999985694885,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.06430000066757202,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11259","display_name":"Agriculture Sustainability and Environmental Impact","score":0.03280000016093254,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline-transport","display_name":"Pipeline transport","score":0.7289999723434448},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.7246000170707703},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.6001999974250793},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.510699987411499},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4494999945163727}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7307000160217285},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.7289999723434448},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.7246000170707703},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.6001999974250793},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.522599995136261},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.510699987411499},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4494999945163727},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.31619998812675476},{"id":"https://openalex.org/C79403827","wikidata":"https://www.wikidata.org/wiki/Q3988","display_name":"Real-time computing","level":1,"score":0.3131999969482422},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.30399999022483826},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.2822999954223633},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.265500009059906},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25029999017715454}],"mesh":[{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag070","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41692950","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41692950","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12960915","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12960915/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12960915/pdf/btag070.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag070","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag070","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313092","display_name":"New Zealand Institute for Plant and Food Research Limited","ror":"https://ror.org/02bchch95"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1969435618","https://openalex.org/W1973094248","https://openalex.org/W1992549770","https://openalex.org/W2060880575","https://openalex.org/W2122598723","https://openalex.org/W2155833028","https://openalex.org/W2167942713","https://openalex.org/W2179438025","https://openalex.org/W2406250479","https://openalex.org/W2579218984","https://openalex.org/W2790119933","https://openalex.org/W2808845633","https://openalex.org/W2898033500","https://openalex.org/W2909472027","https://openalex.org/W2950985821","https://openalex.org/W2951580700","https://openalex.org/W2952615074","https://openalex.org/W2980232174","https://openalex.org/W2994283242","https://openalex.org/W3003192283","https://openalex.org/W3109625748","https://openalex.org/W3111894296","https://openalex.org/W3112212292","https://openalex.org/W3119281122","https://openalex.org/W3120515035","https://openalex.org/W3166154243","https://openalex.org/W4220979272","https://openalex.org/W4221098111","https://openalex.org/W4225577414","https://openalex.org/W4291286390","https://openalex.org/W4311392161","https://openalex.org/W4312122434","https://openalex.org/W4366974966","https://openalex.org/W4386352499","https://openalex.org/W4387974898","https://openalex.org/W4402058504","https://openalex.org/W4403286942"],"related_works":[],"abstract_inverted_index":{"The":[0],"moiraine":[1],"R":[2],"package":[3,14],"is":[4,15,24],"publicly":[5],"available":[6,16,25],"at":[7,19,26],"https://github.com/Plant-Food-Research-Open/moiraine;":[8],"an":[9],"archival":[10],"snapshot":[11],"of":[12],"the":[13],"on":[17],"Zenodo":[18],"https://doi.org/10.5281/zenodo.17172718.":[20],"A":[21],"detailed":[22],"tutorial":[23],"https://plant-food-research-open.github.io/moiraine-manual/.":[27]},"counts_by_year":[],"updated_date":"2026-03-23T07:41:27.035349","created_date":"2026-02-17T00:00:00"}
