{"id":"https://openalex.org/W7125632314","doi":"https://doi.org/10.1093/bioinformatics/btag040","title":"One-hot news: drug synergy models shortcut molecular features","display_name":"One-hot news: drug synergy models shortcut molecular features","publication_year":2026,"publication_date":"2026-01-22","ids":{"openalex":"https://openalex.org/W7125632314","doi":"https://doi.org/10.1093/bioinformatics/btag040","pmid":"https://pubmed.ncbi.nlm.nih.gov/41580962"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btag040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btag040","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123789409","display_name":"Emine Beyza \u00c7and\u0131r","orcid":null},"institutions":[{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Emine Beyza \u00c7and\u0131r","raw_affiliation_strings":["Sabanci University Center of Excellence in Data Analytics, , Istanbul, 34956,","Sabanci University Faculty of Engineering and Natural Sciences, , Istanbul, 34956,"],"affiliations":[{"raw_affiliation_string":"Sabanci University Center of Excellence in Data Analytics, , Istanbul, 34956,","institution_ids":["https://openalex.org/I134235054"]},{"raw_affiliation_string":"Sabanci University Faculty of Engineering and Natural Sciences, , Istanbul, 34956,","institution_ids":["https://openalex.org/I134235054"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068218826","display_name":"Halil \u0130brahim Kuru","orcid":"https://orcid.org/0000-0003-4356-8846"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Halil \u0130brahim Kuru","raw_affiliation_strings":["Bilkent University Department of Computer Engineering, , Ankara, 06800,"],"affiliations":[{"raw_affiliation_string":"Bilkent University Department of Computer Engineering, , Ankara, 06800,","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023995814","display_name":"Magnus Rattray","orcid":"https://orcid.org/0000-0001-8196-5565"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Magnus Rattray","raw_affiliation_strings":["University of Manchester Division of Informatics, Imaging and Data Sciences, , Manchester, M13 9PL,"],"affiliations":[{"raw_affiliation_string":"University of Manchester Division of Informatics, Imaging and Data Sciences, , Manchester, M13 9PL,","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123797207","display_name":"A Ercument Cicek","orcid":null},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"A Erc\u00fcment \u00c7i\u00e7ek","raw_affiliation_strings":["Bilkent University Department of Computer Engineering, , Ankara, 06800,"],"affiliations":[{"raw_affiliation_string":"Bilkent University Department of Computer Engineering, , Ankara, 06800,","institution_ids":["https://openalex.org/I168864056"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051657734","display_name":"\u00d6znur Ta\u015ftan","orcid":"https://orcid.org/0000-0001-7058-5372"},"institutions":[{"id":"https://openalex.org/I134235054","display_name":"Sabanc\u0131 \u00dcniversitesi","ror":"https://ror.org/049asqa32","country_code":"TR","type":"education","lineage":["https://openalex.org/I134235054"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Oznur Tastan","raw_affiliation_strings":["Sabanci University Center of Excellence in Data Analytics, , Istanbul, 34956,","Sabanci University Faculty of Engineering and Natural Sciences, , Istanbul, 34956,"],"affiliations":[{"raw_affiliation_string":"Sabanci University Center of Excellence in Data Analytics, , Istanbul, 34956,","institution_ids":["https://openalex.org/I134235054"]},{"raw_affiliation_string":"Sabanci University Faculty of Engineering and Natural Sciences, , Istanbul, 34956,","institution_ids":["https://openalex.org/I134235054"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5123789409"],"corresponding_institution_ids":["https://openalex.org/I134235054"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21132813,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6116999983787537,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.6116999983787537,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.24140000343322754,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.10019999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41179999709129333},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4020000100135803},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.32429999113082886},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.27709999680519104}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6470999717712402},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49869999289512634},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41179999709129333},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4020000100135803},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33219999074935913},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.32429999113082886},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3190999925136566},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.29409998655319214},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.27709999680519104},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.26829999685287476}],"mesh":[{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btag040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41580962","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41580962","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:13005728","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13005728/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btag040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btag040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W2061061337","https://openalex.org/W2080638211","https://openalex.org/W2103196126","https://openalex.org/W2145952139","https://openalex.org/W2461427403","https://openalex.org/W2600452401","https://openalex.org/W2612467560","https://openalex.org/W2775061087","https://openalex.org/W2811374795","https://openalex.org/W2889689557","https://openalex.org/W3016970897","https://openalex.org/W3164087725","https://openalex.org/W3171849353","https://openalex.org/W3188733779","https://openalex.org/W3203908308","https://openalex.org/W4249344264","https://openalex.org/W4313485929","https://openalex.org/W4316664463","https://openalex.org/W4323031630","https://openalex.org/W4327676467","https://openalex.org/W4362720950","https://openalex.org/W4389131280","https://openalex.org/W4396650180","https://openalex.org/W4399886339","https://openalex.org/W4402087452","https://openalex.org/W4403536827","https://openalex.org/W4404572688","https://openalex.org/W4411925407","https://openalex.org/W4414798660","https://openalex.org/W7117879537","https://openalex.org/W7123661215"],"related_works":[],"abstract_inverted_index":{"The":[0],"scripts":[1],"to":[2],"run":[3],"the":[4],"experiments":[5],"are":[6],"available":[7],"at:":[8],"https://github.com/tastanlab/ohe.":[9]},"counts_by_year":[],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2026-01-26T00:00:00"}
