{"id":"https://openalex.org/W7117358510","doi":"https://doi.org/10.1093/bioinformatics/btaf685","title":"Integrating curation into scientific publishing to train AI models","display_name":"Integrating curation into scientific publishing to train AI models","publication_year":2025,"publication_date":"2025-12-27","ids":{"openalex":"https://openalex.org/W7117358510","doi":"https://doi.org/10.1093/bioinformatics/btaf685","pmid":"https://pubmed.ncbi.nlm.nih.gov/41455082"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf685","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf685/66140480/btaf685.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf685/66140480/btaf685.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058921480","display_name":"J. Abreu-Vicente","orcid":"https://orcid.org/0000-0002-0211-6416"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jorge Abreu-Vicente","raw_affiliation_strings":["EMBO , Heidelberg 69117,"],"raw_orcid":"https://orcid.org/0000-0002-0211-6416","affiliations":[{"raw_affiliation_string":"EMBO , Heidelberg 69117,","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029119505","display_name":"Hannah Sonntag","orcid":"https://orcid.org/0000-0001-5461-3265"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hannah Sonntag","raw_affiliation_strings":["EMBO , Heidelberg 69117,"],"raw_orcid":"https://orcid.org/0000-0001-5461-3265","affiliations":[{"raw_affiliation_string":"EMBO , Heidelberg 69117,","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121401202","display_name":"Thomas Eidens","orcid":null},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Eidens","raw_affiliation_strings":["EMBO , Heidelberg 69117,"],"raw_orcid":"https://orcid.org/0009-0004-8874-3534","affiliations":[{"raw_affiliation_string":"EMBO , Heidelberg 69117,","institution_ids":["https://openalex.org/I1303691731"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011455956","display_name":"Cassie S. Mitchell","orcid":"https://orcid.org/0000-0002-5472-6355"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]},{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cassie S Mitchell","raw_affiliation_strings":["Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine , Atlanta, GA 30332,"],"raw_orcid":"https://orcid.org/0000-0002-5472-6355","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Georgia Institute of Technology and Emory University School of Medicine , Atlanta, GA 30332,","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020988596","display_name":"Thomas Lemberger","orcid":"https://orcid.org/0000-0002-2499-4025"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Lemberger","raw_affiliation_strings":["EMBO , Heidelberg 69117,"],"raw_orcid":"https://orcid.org/0000-0002-2499-4025","affiliations":[{"raw_affiliation_string":"EMBO , Heidelberg 69117,","institution_ids":["https://openalex.org/I1303691731"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.57935841,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6025999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6025999784469604,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.16769999265670776,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.02539999969303608,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5263000130653381},{"id":"https://openalex.org/keywords/publishing","display_name":"Publishing","score":0.4422999918460846},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43639999628067017},{"id":"https://openalex.org/keywords/scientific-publishing","display_name":"Scientific publishing","score":0.39430001378059387},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.3779999911785126}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7026000022888184},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5263000130653381},{"id":"https://openalex.org/C151719136","wikidata":"https://www.wikidata.org/wiki/Q3972943","display_name":"Publishing","level":2,"score":0.4422999918460846},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43639999628067017},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4187000095844269},{"id":"https://openalex.org/C2984423262","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific publishing","level":3,"score":0.39430001378059387},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.3779999911785126},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.34060001373291016},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33239999413490295},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.3231000006198883},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2840999960899353},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27469998598098755},{"id":"https://openalex.org/C2988963302","wikidata":"https://www.wikidata.org/wiki/Q629206","display_name":"Program code","level":2,"score":0.26339998841285706}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011643","descriptor_name":"Publishing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf685","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf685/66140480/btaf685.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41455082","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41455082","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12836429","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12836429/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf685","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf685","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf685/66140480/btaf685.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6676077842712402,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309321","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7117358510.pdf","grobid_xml":"https://content.openalex.org/works/W7117358510.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1984293430","https://openalex.org/W2071038402","https://openalex.org/W2113142309","https://openalex.org/W2123579157","https://openalex.org/W2149069010","https://openalex.org/W2162965868","https://openalex.org/W2163918411","https://openalex.org/W2302501749","https://openalex.org/W2346452181","https://openalex.org/W2946690328","https://openalex.org/W2952465807","https://openalex.org/W2973059055","https://openalex.org/W3028004046","https://openalex.org/W3034917217","https://openalex.org/W3046375318","https://openalex.org/W3082330004","https://openalex.org/W3109524385","https://openalex.org/W3179500067","https://openalex.org/W4226154421","https://openalex.org/W4283318325","https://openalex.org/W4387780829"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"High-throughput":[1],"extraction":[2],"and":[3,19,30,36,57,91,112,125,149,180,196,203],"structured":[4],"labeling":[5],"of":[6,33,98,131,142],"data":[7,45],"from":[8,82],"academic":[9,49],"articles":[10,88],"are":[11,189,198],"crucial":[12],"for":[13,134,174],"enabling":[14],"downstream":[15],"machine":[16],"learning":[17],"applications":[18,173],"secondary":[20],"analyses.":[21],"Current":[22],"approaches":[23],"lack":[24],"integration":[25],"with":[26,63],"the":[27,48,119,129,132],"publishing":[28,50],"process":[29,51],"comprehensive":[31],"annotation":[32,68],"experimental":[34,123],"roles":[35,121],"methodologies":[37],"alongside":[38],"bioentity":[39],"recognition.":[40],"RESULTS:":[41],"We":[42,127,169],"embedded":[43],"multimodal":[44],"curation":[46],"into":[47,145,177],"to":[52,66],"annotate":[53],"segmented":[54],"figure":[55,143],"panels":[56],"captions,":[58],"combining":[59],"natural":[60],"language":[61],"processing":[62],"authors'":[64],"feedback":[65],"increase":[67],"accuracy.":[69],"The":[70,193],"resulting":[71],"dataset,":[72],"SourceData-NLP,":[73],"comprises":[74],"over":[75],"620":[76],"000":[77],"annotated":[78],"biomedical":[79],"entities,":[80],"curated":[81],"18":[83],"689":[84],"figures":[85,176],"in":[86,89,122],"3223":[87],"molecular":[90],"cell":[92,106,108],"biology.":[93],"Annotations":[94],"include":[95],"eight":[96],"classes":[97,116],"bioentities":[99],"(small":[100],"molecules,":[101],"gene":[102],"products,":[103],"subcellular":[104],"components,":[105],"lines,":[107],"types,":[109],"tissues,":[110],"organisms,":[111],"diseases),":[113],"plus":[114],"additional":[115],"that":[117,155],"delineate":[118],"entities'":[120],"designs":[124],"methodologies.":[126],"evaluate":[128],"utility":[130],"dataset":[133,195],"training":[135],"AI":[136],"models":[137,188],"using":[138],"named-entity":[139],"recognition,":[140],"segmentation":[141],"captions":[144],"their":[146,181],"constituent":[147],"panels,":[148],"a":[150,161,166],"novel":[151],"context-dependent":[152],"semantic":[153],"task":[154],"assesses":[156],"whether":[157],"an":[158],"entity":[159],"is":[160],"controlled":[162],"intervention":[163],"target":[164],"or":[165],"measurement":[167],"object.":[168],"also":[170],"demonstrate":[171],"multi-modal":[172],"segmenting":[175],"panel":[178],"images":[179],"corresponding":[182],"captions.":[183],"AVAILABILITY":[184],"AND":[185],"IMPLEMENTATION:":[186],"Trained":[187],"available":[190,199],"at":[191,200],"https://huggingface.co/EMBO.":[192],"SourceData-NLP":[194],"code":[197],"https://github.com/source-data/soda-data,":[201],"https://github.com/source-data/soda-model,":[202],"https://github.com/source-data/soda_image_segmentation.":[204]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-12-27T00:00:00"}
