{"id":"https://openalex.org/W4416888770","doi":"https://doi.org/10.1093/bioinformatics/btaf647","title":"PICNIC web server for predicting proteins involved in biomolecular condensates","display_name":"PICNIC web server for predicting proteins involved in biomolecular condensates","publication_year":2025,"publication_date":"2025-11-29","ids":{"openalex":"https://openalex.org/W4416888770","doi":"https://doi.org/10.1093/bioinformatics/btaf647","pmid":"https://pubmed.ncbi.nlm.nih.gov/41325268"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf647/65667502/btaf647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf647/65667502/btaf647.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005445032","display_name":"Anna Hadarovich","orcid":"https://orcid.org/0000-0002-5139-4308"},"institutions":[{"id":"https://openalex.org/I4210148197","display_name":"Center for Systems Biology Dresden","ror":"https://ror.org/05hrn3e05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I149899117","https://openalex.org/I4210111875","https://openalex.org/I4210148197","https://openalex.org/I4210159854","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anna Hadarovich","raw_affiliation_strings":["Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","Center for Systems Biology Dresden, Dresden, 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Center for Systems Biology Dresden, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210148197"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074363827","display_name":"Maxim Scheremetjew","orcid":"https://orcid.org/0000-0002-7458-3072"},"institutions":[{"id":"https://openalex.org/I4210148197","display_name":"Center for Systems Biology Dresden","ror":"https://ror.org/05hrn3e05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I149899117","https://openalex.org/I4210111875","https://openalex.org/I4210148197","https://openalex.org/I4210159854","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maxim Scheremetjew","raw_affiliation_strings":["Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","Center for Systems Biology Dresden, Dresden, 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Center for Systems Biology Dresden, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210148197"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Hari Raj Singh","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hari Raj Singh","raw_affiliation_strings":["Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015600934","display_name":"HongKee Moon","orcid":"https://orcid.org/0000-0001-7159-924X"},"institutions":[{"id":"https://openalex.org/I4210148197","display_name":"Center for Systems Biology Dresden","ror":"https://ror.org/05hrn3e05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I149899117","https://openalex.org/I4210111875","https://openalex.org/I4210148197","https://openalex.org/I4210159854","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"HongKee Moon","raw_affiliation_strings":["Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Center for Systems Biology Dresden, Dresden, 01307, Germany","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7159-924X","affiliations":[{"raw_affiliation_string":"Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Center for Systems Biology Dresden, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068222115","display_name":"Lena Hersemann","orcid":"https://orcid.org/0000-0001-9268-2915"},"institutions":[{"id":"https://openalex.org/I4210148197","display_name":"Center for Systems Biology Dresden","ror":"https://ror.org/05hrn3e05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I149899117","https://openalex.org/I4210111875","https://openalex.org/I4210148197","https://openalex.org/I4210159854","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lena Hersemann","raw_affiliation_strings":["Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","Center for Systems Biology Dresden, Dresden, 01307, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Center for Systems Biology Dresden, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210148197"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091552955","display_name":"\u00c1gnes T\u00f3th-Petr\u00f3czy","orcid":"https://orcid.org/0000-0002-0333-604X"},"institutions":[{"id":"https://openalex.org/I4210124966","display_name":"Innovation Cluster (Canada)","ror":"https://ror.org/02x8ye509","country_code":"CA","type":"company","lineage":["https://openalex.org/I4210124966"]},{"id":"https://openalex.org/I4210148197","display_name":"Center for Systems Biology Dresden","ror":"https://ror.org/05hrn3e05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I149899117","https://openalex.org/I4210111875","https://openalex.org/I4210148197","https://openalex.org/I4210159854","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]},{"id":"https://openalex.org/I4405267341","display_name":"Physics of Life","ror":"https://ror.org/029yt9178","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4405267341","https://openalex.org/I78650965"]},{"id":"https://openalex.org/I78650965","display_name":"Technische Universit\u00e4t Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["CA","DE"],"is_corresponding":false,"raw_author_name":"Agnes Toth-Petroczy","raw_affiliation_strings":["Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","Cluster of Excellence Physics of Life , TU Dresden, 01062 Dresden,","Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","Center for Systems Biology Dresden, Dresden, 01307, Germany","Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","Cluster of Excellence Physics of Life, Dresden, 01062, Germany"],"raw_orcid":"https://orcid.org/0000-0002-0333-604X","affiliations":[{"raw_affiliation_string":"Center for Systems Biology Dresden , Pfotenhauerstra\u00dfe 108, 01307 Dresden,","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Cluster of Excellence Physics of Life , TU Dresden, 01062 Dresden,","institution_ids":["https://openalex.org/I78650965","https://openalex.org/I4405267341"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics , Pfotenhauersta\u00dfe 108 , 01307 Dresden,","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Center for Systems Biology Dresden, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210148197"]},{"raw_affiliation_string":"Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, 01307, Germany","institution_ids":["https://openalex.org/I4210159854"]},{"raw_affiliation_string":"Cluster of Excellence Physics of Life, Dresden, 01062, Germany","institution_ids":["https://openalex.org/I4210124966","https://openalex.org/I4405267341"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28183721,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2939999997615814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.2939999997615814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.20110000669956207,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.17339999973773956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/picnic","display_name":"Picnic","score":0.9779999852180481},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7202000021934509},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49390000104904175},{"id":"https://openalex.org/keywords/clickstream","display_name":"Clickstream","score":0.489300012588501},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.3555000126361847},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3294999897480011}],"concepts":[{"id":"https://openalex.org/C2776829547","wikidata":"https://www.wikidata.org/wiki/Q506294","display_name":"Picnic","level":2,"score":0.9779999852180481},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7202000021934509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7134000062942505},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49390000104904175},{"id":"https://openalex.org/C138744977","wikidata":"https://www.wikidata.org/wiki/Q5132438","display_name":"Clickstream","level":5,"score":0.489300012588501},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41659998893737793},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.3555000126361847},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3294999897480011},{"id":"https://openalex.org/C2983909278","wikidata":"https://www.wikidata.org/wiki/Q6368","display_name":"Web browser","level":3,"score":0.3255000114440918},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.3190999925136566},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3190000057220459},{"id":"https://openalex.org/C2984519610","wikidata":"https://www.wikidata.org/wiki/Q35127","display_name":"Web site","level":3,"score":0.2930999994277954},{"id":"https://openalex.org/C164554305","wikidata":"https://www.wikidata.org/wiki/Q71550","display_name":"Application server","level":2,"score":0.28540000319480896},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.26759999990463257},{"id":"https://openalex.org/C2984499602","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Computer software","level":2,"score":0.2628999948501587}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000091582","descriptor_name":"Biomolecular Condensates","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf647/65667502/btaf647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41325268","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41325268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12766916","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12766916/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf647","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf647","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf647/65667502/btaf647.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G270375005","display_name":null,"funder_award_id":"101116284","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"}],"funders":[{"id":"https://openalex.org/F4320322434","display_name":"Max-Planck-Gesellschaft","ror":"https://ror.org/01hhn8329"},{"id":"https://openalex.org/F4320325162","display_name":"NOMIS Stiftung","ror":"https://ror.org/01zkd3118"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416888770.pdf","grobid_xml":"https://content.openalex.org/works/W4416888770.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1952608303","https://openalex.org/W2054352933","https://openalex.org/W2103017472","https://openalex.org/W2590568317","https://openalex.org/W2969279439","https://openalex.org/W2977849281","https://openalex.org/W3099323319","https://openalex.org/W3111523618","https://openalex.org/W3112376646","https://openalex.org/W3123015207","https://openalex.org/W3127087732","https://openalex.org/W3143253488","https://openalex.org/W3177828909","https://openalex.org/W3211795435","https://openalex.org/W4221117452","https://openalex.org/W4281613736","https://openalex.org/W4281790889","https://openalex.org/W4362673600","https://openalex.org/W4376869965","https://openalex.org/W4388464011","https://openalex.org/W4396721167","https://openalex.org/W4403931192","https://openalex.org/W4405269076","https://openalex.org/W4412856349"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"Biomolecular":[1],"condensates":[2,21,42],"have":[3],"been":[4,23],"implicated":[5],"in":[6,77,101],"key":[7],"cellular":[8],"processes":[9],"such":[10],"as":[11],"gene":[12],"regulation,":[13],"stress":[14],"response,":[15],"and":[16,18,27,87,165],"signaling,":[17],"dysregulation":[19],"of":[20,40,72,106,161],"has":[22],"linked":[24],"to":[25,58,94],"neurodegeneration":[26],"other":[28],"diseases.":[29],"Computational":[30],"algorithms":[31,136],"that":[32,134],"predict":[33,95,137],"protein":[34,98,160],"condensation":[35],"can":[36,114,154],"aid":[37],"systematic":[38],"characterization":[39],"biomolecular":[41,102],"at":[43,176],"the":[44,53,68,73,112],"proteome":[45],"scale.":[46],"However,":[47],"many":[48],"experimental":[49],"labs":[50],"may":[51],"lack":[52],"computational":[54],"background":[55],"or":[56],"resources":[57],"run":[59],"sophisticated":[60],"prediction":[61],"tools":[62],"locally.":[63],"RESULTS:":[64],"Here,":[65],"we":[66],"developed":[67],"web":[69,148],"server":[70],"implementation":[71],"PICNIC":[74,84,135,172],"(Proteins":[75],"Involved":[76],"CoNdensates":[78],"In":[79,104],"Cells)":[80],"machine":[81],"learning":[82],"algorithm.":[83],"uses":[85],"sequence-":[86],"structure-based":[88],"features":[89,125],"derived":[90],"from":[91,117],"AlphaFold2":[92],"models":[93],"if":[96],"a":[97],"is":[99,174],"involved":[100],"condensates.":[103],"case":[105],"well-studied":[107],"proteins":[108,140],"with":[109,141],"available":[110,175],"annotations,":[111],"user":[113],"further":[115],"benefit":[116],"an":[118,146],"extended":[119],"model,":[120],"PICNIC-GO,":[121],"which":[122],"includes":[123],"additional":[124],"based":[126],"on":[127],"Gene":[128],"Ontology":[129],"terms.":[130],"Benchmark":[131],"tests":[132],"show":[133],"condensate":[138],"forming":[139],"\u223c80%":[142],"accuracy.":[143],"By":[144],"providing":[145],"easy-to-use":[147],"server,":[149],"researchers,":[150],"without":[151],"specialized":[152],"expertise,":[153],"rapidly":[155],"test":[156],"hypotheses":[157],"about":[158],"any":[159],"interest,":[162],"including":[163],"designed":[164],"mutated":[166],"sequences.":[167],"AVAILABILITY":[168],"AND":[169],"IMPLEMENTATION:":[170],"The":[171],"webserver":[173],"https://picnic-bio.org/.":[177]},"counts_by_year":[],"updated_date":"2026-07-13T07:31:44.756512","created_date":"2025-12-01T00:00:00"}