{"id":"https://openalex.org/W4416331583","doi":"https://doi.org/10.1093/bioinformatics/btaf630","title":"13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis","display_name":"13CFLUX - third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis","publication_year":2025,"publication_date":"2025-11-15","ids":{"openalex":"https://openalex.org/W4416331583","doi":"https://doi.org/10.1093/bioinformatics/btaf630","pmid":"https://pubmed.ncbi.nlm.nih.gov/41252427"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf630","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf630","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093572685","display_name":"Anton Stratmann","orcid":"https://orcid.org/0000-0001-8391-3398"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Anton Stratmann","raw_affiliation_strings":["Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039489312","display_name":"Martin Bey\u00df","orcid":"https://orcid.org/0000-0002-5383-3415"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Bey\u00df","raw_affiliation_strings":["Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015546511","display_name":"Johann F. Jadebeck","orcid":"https://orcid.org/0000-0002-5026-1546"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johann F Jadebeck","raw_affiliation_strings":["Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018520418","display_name":"Wolfgang Wiechert","orcid":"https://orcid.org/0000-0001-8501-0694"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I887968799","display_name":"RWTH Aachen University","ror":"https://ror.org/04xfq0f34","country_code":"DE","type":"education","lineage":["https://openalex.org/I887968799"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Wolfgang Wiechert","raw_affiliation_strings":["Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,"],"affiliations":[{"raw_affiliation_string":"Computational Systems Biotechnology (AVT.CSB), RWTH Aachen University , 52062 Aachen,","institution_ids":["https://openalex.org/I887968799"]},{"raw_affiliation_string":"Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"RWTH Aachen University Computational Systems Biotechnology (AVT.CSB), , Aachen, 52062,","institution_ids":["https://openalex.org/I887968799"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079251665","display_name":"Katharina N\u00f6h","orcid":"https://orcid.org/0000-0002-5407-2275"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katharina N\u00f6h","raw_affiliation_strings":["Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,"],"affiliations":[{"raw_affiliation_string":"Institute of Bio- and Geosciences, IBG-1: Biotechnology, Forschungszentrum J\u00fclich GmbH , 52425 J\u00fclich,","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"Forschungszentrum J\u00fclich GmbH Institute of Bio- and Geosciences, IBG-1: Biotechnology, , J\u00fclich, 52425,","institution_ids":["https://openalex.org/I171892758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5093572685"],"corresponding_institution_ids":["https://openalex.org/I171892758","https://openalex.org/I887968799"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.31255169,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.2590000033378601,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.2590000033378601,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10631","display_name":"Cancer, Hypoxia, and Metabolism","score":0.14350000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.08209999650716782,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/replicate","display_name":"Replicate","score":0.6226999759674072},{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.5026999711990356},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.428600013256073},{"id":"https://openalex.org/keywords/metabolic-flux-analysis","display_name":"Metabolic flux analysis","score":0.4156000018119812},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.34459999203681946}],"concepts":[{"id":"https://openalex.org/C2781162219","wikidata":"https://www.wikidata.org/wiki/Q26250693","display_name":"Replicate","level":2,"score":0.6226999759674072},{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.5026999711990356},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.428600013256073},{"id":"https://openalex.org/C160941953","wikidata":"https://www.wikidata.org/wiki/Q6822342","display_name":"Metabolic flux analysis","level":3,"score":0.4156000018119812},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3580999970436096},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35010001063346863},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.34459999203681946},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.334199994802475},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.31369999051094055},{"id":"https://openalex.org/C2984499602","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Computer software","level":2,"score":0.2985000014305115},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.2768999934196472},{"id":"https://openalex.org/C21880701","wikidata":"https://www.wikidata.org/wiki/Q2144042","display_name":"Process engineering","level":1,"score":0.2614000141620636},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25130000710487366}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002247","descriptor_name":"Carbon Isotopes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064688","descriptor_name":"Metabolic Flux Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf630","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41252427","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41252427","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12696647","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12696647/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf630","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf630","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1695139953","https://openalex.org/W1975870669","https://openalex.org/W1992170087","https://openalex.org/W2001077777","https://openalex.org/W2014323212","https://openalex.org/W2037881978","https://openalex.org/W2044306109","https://openalex.org/W2134138595","https://openalex.org/W2146095405","https://openalex.org/W2238139779","https://openalex.org/W2298499289","https://openalex.org/W2736080104","https://openalex.org/W2957881605","https://openalex.org/W2970801850","https://openalex.org/W2978779325","https://openalex.org/W3174355401","https://openalex.org/W3210388257","https://openalex.org/W4200319474","https://openalex.org/W4220889857","https://openalex.org/W4229377822","https://openalex.org/W4318219817","https://openalex.org/W4382502650","https://openalex.org/W4385719274","https://openalex.org/W4385971524","https://openalex.org/W4388562984","https://openalex.org/W4390404716","https://openalex.org/W4393942099","https://openalex.org/W4400184628"],"related_works":[],"abstract_inverted_index":{"Sources":[0],"and":[1,7],"containers":[2],"are":[3],"provided":[4],"at":[5,16],"https://jugit.fz-juelich.de/IBG-1/ModSim/Fluxomics/13CFLUX,":[6],"scripts":[8],"to":[9],"replicate":[10],"results":[11],"in":[12],"the":[13],"supplementary":[14],"data":[15],"https://github.com/JuBiotech/Supplement-to-Stratmann-et-al.-Bioinformatics-2025.":[17]},"counts_by_year":[],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-11-19T00:00:00"}
