{"id":"https://openalex.org/W4416087183","doi":"https://doi.org/10.1093/bioinformatics/btaf619","title":"STAHD: a scalable and accurate method to detect spatial domains in high-resolution spatial transcriptomics data","display_name":"STAHD: a scalable and accurate method to detect spatial domains in high-resolution spatial transcriptomics data","publication_year":2025,"publication_date":"2025-11-10","ids":{"openalex":"https://openalex.org/W4416087183","doi":"https://doi.org/10.1093/bioinformatics/btaf619","pmid":"https://pubmed.ncbi.nlm.nih.gov/41212773"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf619","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf619","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf619/65264001/btaf619.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf619/65264001/btaf619.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007272827","display_name":"Zhihua Du","orcid":"https://orcid.org/0000-0002-7213-2198"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhihua Du","raw_affiliation_strings":["College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100401420","display_name":"Di Wang","orcid":"https://orcid.org/0000-0002-3171-4001"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I4210140143","display_name":"Dynamic Systems (United States)","ror":"https://ror.org/043vm9914","country_code":"US","type":"company","lineage":["https://openalex.org/I4210140143"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Di Wang","raw_affiliation_strings":["College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,","College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China","Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","institution_ids":["https://openalex.org/I2799850029"]},{"raw_affiliation_string":"Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,","institution_ids":["https://openalex.org/I4210140143"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China","institution_ids":["https://openalex.org/I4210140143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068507968","display_name":"Q. H. Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiyi Chen","raw_affiliation_strings":["College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113380119","display_name":"Yuehua Ou","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuehua Ou","raw_affiliation_strings":["College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University , Shenzhen, Guangdong, 518000,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, ShenZhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021886812","display_name":"Xinlei Huang","orcid":"https://orcid.org/0009-0009-7183-9237"},"institutions":[{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I4210140143","display_name":"Dynamic Systems (United States)","ror":"https://ror.org/043vm9914","country_code":"US","type":"company","lineage":["https://openalex.org/I4210140143"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xinlei Huang","raw_affiliation_strings":["Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China","Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,"],"affiliations":[{"raw_affiliation_string":"Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","institution_ids":["https://openalex.org/I2799850029"]},{"raw_affiliation_string":"Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China","institution_ids":["https://openalex.org/I4210140143"]},{"raw_affiliation_string":"Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,","institution_ids":["https://openalex.org/I4210140143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100667243","display_name":"Zhou Xiang","orcid":"https://orcid.org/0000-0003-1470-5805"},"institutions":[{"id":"https://openalex.org/I32820368","display_name":"Guangdong Polytechnic of Science and Technology","ror":"https://ror.org/01wq2p249","country_code":"CN","type":"education","lineage":["https://openalex.org/I32820368"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Zhou","raw_affiliation_strings":["Guangdong Institute of Intelligence Science and Technology , Hengqin , Zhuhai, Guangdong, 519031,","Guangdong Institute of Intelligence Science and Technology, Hengqin, Zhuhai, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Guangdong Institute of Intelligence Science and Technology , Hengqin , Zhuhai, Guangdong, 519031,","institution_ids":["https://openalex.org/I32820368"]},{"raw_affiliation_string":"Guangdong Institute of Intelligence Science and Technology, Hengqin, Zhuhai, Guangdong, China","institution_ids":["https://openalex.org/I32820368"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036151138","display_name":"Xubin Zheng","orcid":"https://orcid.org/0000-0001-7365-1902"},"institutions":[{"id":"https://openalex.org/I2799850029","display_name":"Dongguan University of Technology","ror":"https://ror.org/01m8p7q42","country_code":"CN","type":"education","lineage":["https://openalex.org/I2799850029"]},{"id":"https://openalex.org/I4210140143","display_name":"Dynamic Systems (United States)","ror":"https://ror.org/043vm9914","country_code":"US","type":"company","lineage":["https://openalex.org/I4210140143"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Xubin Zheng","raw_affiliation_strings":["Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,","Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China"],"affiliations":[{"raw_affiliation_string":"Dongguan Key Laboratory for AI and Dynamical Systems, School of Computing and Information Technology, Great Bay University , Dongguan, Guangdong, 523000,","institution_ids":["https://openalex.org/I2799850029"]},{"raw_affiliation_string":"Great Bay University Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, , Guangdong,","institution_ids":["https://openalex.org/I4210140143"]},{"raw_affiliation_string":"Guangdong Provincial Key Laboratory of Mathematical and Neural Dynamical Systems, School of Computing and Information Technology, Great Bay University, Guangdong, China","institution_ids":["https://openalex.org/I4210140143"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5007272827"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.29972621,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9603000283241272,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9603000283241272,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.004999999888241291,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.004100000020116568,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6448000073432922},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5759000182151794},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5134999752044678},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.46000000834465027},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41179999709129333}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7749999761581421},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6448000073432922},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5759000182151794},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5396999716758728},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5134999752044678},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.46000000834465027},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4178999960422516},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41179999709129333},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4020000100135803},{"id":"https://openalex.org/C2983685735","wikidata":"https://www.wikidata.org/wiki/Q5227355","display_name":"Data source","level":2,"score":0.29750001430511475},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.28519999980926514}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059016","descriptor_name":"Tumor Microenvironment","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf619","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf619","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf619/65264001/btaf619.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41212773","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41212773","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12790823","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12790823/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf619","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf619","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf619/65264001/btaf619.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1231421488","display_name":null,"funder_award_id":"under","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G688162940","display_name":null,"funder_award_id":"32300554","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7279309214","display_name":null,"funder_award_id":"62176164","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8863666567","display_name":null,"funder_award_id":"and No.","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416087183.pdf","grobid_xml":"https://content.openalex.org/works/W4416087183.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1556139692","https://openalex.org/W1764198257","https://openalex.org/W1967994686","https://openalex.org/W1974208182","https://openalex.org/W1978693882","https://openalex.org/W1982617257","https://openalex.org/W1983682905","https://openalex.org/W2004339821","https://openalex.org/W2073654208","https://openalex.org/W2080181628","https://openalex.org/W2100755520","https://openalex.org/W2150473997","https://openalex.org/W2605177850","https://openalex.org/W2783537648","https://openalex.org/W2911875851","https://openalex.org/W3137919069","https://openalex.org/W3154984820","https://openalex.org/W3164692211","https://openalex.org/W4226192560","https://openalex.org/W4285388882","https://openalex.org/W4302362633","https://openalex.org/W4312056076","https://openalex.org/W4322738920","https://openalex.org/W4323074381","https://openalex.org/W4365139490","https://openalex.org/W4387580076","https://openalex.org/W4388017732","https://openalex.org/W4390814844","https://openalex.org/W4390828321","https://openalex.org/W4392980156","https://openalex.org/W4401034072","https://openalex.org/W4403022098","https://openalex.org/W4403022106","https://openalex.org/W4403598089","https://openalex.org/W4405953164","https://openalex.org/W4408967910","https://openalex.org/W4410472833","https://openalex.org/W4411069266"],"related_works":[],"abstract_inverted_index":{"Source":[0],"code":[1],"and":[2],"data":[3],"are":[4],"available":[5],"at:":[6],"https://github.com/Little-Eel/STAHD.":[7]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-11-10T00:00:00"}
