{"id":"https://openalex.org/W4416247155","doi":"https://doi.org/10.1093/bioinformatics/btaf618","title":"De-Bruijn graph partitioning for scalable and accurate DNA storage processing","display_name":"De-Bruijn graph partitioning for scalable and accurate DNA storage processing","publication_year":2025,"publication_date":"2025-11-01","ids":{"openalex":"https://openalex.org/W4416247155","doi":"https://doi.org/10.1093/bioinformatics/btaf618","pmid":"https://pubmed.ncbi.nlm.nih.gov/41206925"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf618","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf618","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115046995","display_name":"Florestan De Moor","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Florestan De Moor","raw_affiliation_strings":["IRISA, CNRS , Rennes, 35042,","IRISA, CNRS, Rennes, 35042, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRISA, CNRS , Rennes, 35042,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA, CNRS, Rennes, 35042, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105458532","display_name":"Olivier Boull\u00e9","orcid":"https://orcid.org/0009-0004-7143-2254"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Boull\u00e9","raw_affiliation_strings":["IRISA, CNRS , Rennes, 35042,","IRISA, CNRS, Rennes, 35042, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRISA, CNRS , Rennes, 35042,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA, CNRS, Rennes, 35042, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008215565","display_name":"Dominique Lavenier","orcid":"https://orcid.org/0000-0003-2557-680X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Dominique Lavenier","raw_affiliation_strings":["IRISA, CNRS , Rennes, 35042,","IRISA, CNRS, Rennes, 35042, France"],"raw_orcid":"https://orcid.org/0000-0003-2557-680X","affiliations":[{"raw_affiliation_string":"IRISA, CNRS , Rennes, 35042,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]},{"raw_affiliation_string":"IRISA, CNRS, Rennes, 35042, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008215565"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2802519937"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.3894,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6348833,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9505000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9505000114440918,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.014100000262260437,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12326","display_name":"Network Packet Processing and Optimization","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/1708","display_name":"Hardware and Architecture"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snapshot","display_name":"Snapshot (computer storage)","score":0.6814000010490417},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6714000105857849},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.6556000113487244},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6219000220298767},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5253999829292297},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4544999897480011},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.3100000023841858}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8569999933242798},{"id":"https://openalex.org/C55282118","wikidata":"https://www.wikidata.org/wiki/Q252683","display_name":"Snapshot (computer storage)","level":2,"score":0.6814000010490417},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6714000105857849},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.6556000113487244},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6219000220298767},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5253999829292297},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4544999897480011},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.43939998745918274},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41290000081062317},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.37529999017715454},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.3100000023841858},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3095000088214874},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.296099990606308},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.28999999165534973},{"id":"https://openalex.org/C194739806","wikidata":"https://www.wikidata.org/wiki/Q66221","display_name":"Computer data storage","level":2,"score":0.2888000011444092},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.28119999170303345},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.2732999920845032},{"id":"https://openalex.org/C76518257","wikidata":"https://www.wikidata.org/wiki/Q271680","display_name":"Software framework","level":5,"score":0.2630999982357025},{"id":"https://openalex.org/C2989134064","wikidata":"https://www.wikidata.org/wiki/Q288510","display_name":"Execution time","level":2,"score":0.26170000433921814},{"id":"https://openalex.org/C2984499602","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Computer software","level":2,"score":0.25519999861717224},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25360000133514404},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.2502000033855438}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf618","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41206925","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41206925","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11427666","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12619639","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-05375444v1","is_oa":true,"landing_page_url":"https://hal.science/hal-05375444","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2025, 41 (11), pp.1-9. &#x27E8;10.1093/bioinformatics/btaf618&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf618","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf618","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4197949938","display_name":"Stockage de donn\u00e9es massives sur ADN et polym\u00e8res artificiels","funder_award_id":"ANR-22-PEXM-0005","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W2025383314","https://openalex.org/W2087064593","https://openalex.org/W2124351063","https://openalex.org/W2136651963","https://openalex.org/W2145853890","https://openalex.org/W2149616469","https://openalex.org/W2157539385","https://openalex.org/W2160969485","https://openalex.org/W2162980030","https://openalex.org/W2170747616","https://openalex.org/W2592122940","https://openalex.org/W2904592340","https://openalex.org/W2944582089","https://openalex.org/W2950589160","https://openalex.org/W2953008890","https://openalex.org/W2989744057","https://openalex.org/W4220791336","https://openalex.org/W4285200743","https://openalex.org/W4295453817","https://openalex.org/W4310786235","https://openalex.org/W4394997720","https://openalex.org/W4411170804"],"related_works":[],"abstract_inverted_index":{"MOTIVATION:":[0],"DNA-based":[1],"data":[2,50,73],"storage":[3],"offers":[4],"a":[5,58,124,132,144,147],"compelling":[6],"solution":[7],"for":[8,34,117],"long-term,":[9],"high-density":[10],"archiving.":[11],"In":[12],"this":[13,165],"framework,":[14],"accurately":[15],"reconstructing":[16],"high-quality":[17],"encoded":[18,88],"sequences":[19],"after":[20],"sequencing":[21,72,78],"is":[22,42,107,182],"critical,":[23],"as":[24],"it":[25],"directly":[26],"impacts":[27],"the":[28,46,76,86,90,99,112,158,162,172,180],"design":[29],"of":[30,49,71,75,85,126,179],"error-correcting":[31],"codes":[32],"optimized":[33,116],"DNA":[35],"storage.":[36],"Furthermore,":[37],"efficient":[38],"and":[39,68,80,96,104,115,157],"scalable":[40],"processing":[41,70],"essential":[43],"to":[44,131,160],"manage":[45],"large":[47],"volumes":[48],"expected":[51],"in":[52,89,109,141],"such":[53],"applications.":[54],"RESULTS:":[55],"We":[56],"introduce":[57],"novel":[59],"method":[60,100],"based":[61],"on":[62,93,146],"de-Bruijn":[63],"graph":[64],"partitioning,":[65],"enabling":[66],"fast":[67],"accurate":[69],"regardless":[74],"underlying":[77],"technology":[79],"without":[81],"requiring":[82],"prior":[83],"knowledge":[84],"information":[87],"oligonucleotides.":[91],"Evaluated":[92],"both":[94],"synthetic":[95],"real":[97],"datasets,":[98],"achieves":[101],"excellent":[102],"precision":[103],"recall.":[105],"It":[106],"implemented":[108],"C++":[110],"within":[111],"software":[113,156],"ConCluD":[114,155],"multi-core":[118],"servers.":[119],"Our":[120],"experiments":[121,163],"show":[122],"that":[123],"dataset":[125],"89":[127],"million":[128],"reads,":[129],"corresponding":[130],"10":[133],"GB":[134],"fasta":[135],"file,":[136],"can":[137],"be":[138],"fully":[139],"processed":[140],"less":[142],"than":[143],"minute":[145],"standard":[148],"32-cores":[149],"server.":[150],"AVAILABILITY":[151],"AND":[152],"IMPLEMENTATION:":[153],"The":[154],"scripts":[159],"reproduce":[161],"from":[164],"paper":[166],"are":[167],"available":[168],"at":[169,185],"https://gitlab.inria.fr/pim/org.pim.dnarxiv":[170],"under":[171],"GNU":[173],"AGPLv3":[174],"licence.":[175],"An":[176],"archival":[177],"snapshot":[178],"repository":[181],"also":[183],"provided":[184],"https://doi.org/10.5281/zenodo.17160067.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-11-10T00:00:00"}
