{"id":"https://openalex.org/W4416122171","doi":"https://doi.org/10.1093/bioinformatics/btaf607","title":"QuiCAT: a scalable and flexible framework for mapping synthetic sequences","display_name":"QuiCAT: a scalable and flexible framework for mapping synthetic sequences","publication_year":2025,"publication_date":"2025-11-11","ids":{"openalex":"https://openalex.org/W4416122171","doi":"https://doi.org/10.1093/bioinformatics/btaf607","pmid":"https://pubmed.ncbi.nlm.nih.gov/41217759"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf607","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf607","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf607/65270268/btaf607.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf607/65270268/btaf607.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Daniele Lucarelli","orcid":"https://orcid.org/0000-0002-0393-3848"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Daniele Lucarelli","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","Institute of Computational Biology, Helmholtz Center , Munich,","German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","Institute of Computational Biology, Helmholtz Center Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center , Munich,","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Tina Kos","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tina Kos","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","Technical University of Munich , TUM School of Medicine and Health, ,"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Technical University of Munich , TUM School of Medicine and Health, ,","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045708537","display_name":"C. A. Shull","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Caylie Shull","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sara Jim\u00e9nez","orcid":"https://orcid.org/0000-0001-7103-7474"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sara Jim\u00e9nez","raw_affiliation_strings":["Institute of Computational Biology, Helmholtz Center , Munich,","Institute of Computational Biology, Helmholtz Center Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center , Munich,","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040459908","display_name":"Rupert \u00d6llinger","orcid":"https://orcid.org/0000-0002-2292-5982"},"institutions":[{"id":"https://openalex.org/I4210110449","display_name":"Translational Research in Oncology","ror":"https://ror.org/01yqkfx81","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210110449"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"Rupert \u00d6llinger","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I4210110449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082231210","display_name":"Roland Rad","orcid":"https://orcid.org/0000-0002-6849-9659"},"institutions":[{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I4210110449","display_name":"Translational Research in Oncology","ror":"https://ror.org/01yqkfx81","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I4210110449"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","FR"],"is_corresponding":false,"raw_author_name":"Roland Rad","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I4210110449"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090240499","display_name":"Dieter Saur","orcid":"https://orcid.org/0000-0001-5874-0210"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802619606","display_name":"TUM Klinikum","ror":"https://ror.org/04jc43x05","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802619606","https://openalex.org/I62916508"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dieter Saur","raw_affiliation_strings":["Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar German Cancer Consortium (DKTK), partner site Munich, ,","Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich","German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand"],"affiliations":[{"raw_affiliation_string":"Center for Translational Cancer Research (TranslaTUM), TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Division of Translational Cancer Research, German Cancer Research Center (DKFZ), German Cancer Consortium (DKTK) , Heidelberg, 69120,","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK), partner site Munich, a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar, Munich ,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"a partnership between DKFZ and TUM University Hospital Klinikum rechts der Isar German Cancer Consortium (DKTK), partner site Munich, ,","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Chair of Translational Cancer Research and Institute of Experimental Cancer Therapy, Klinikum rechts der Isar, TUM School of Medicine and Health, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I2802619606"]},{"raw_affiliation_string":"Department of Internal Medicine II, TUM School of Medicine and Health, Technical University of Munich","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"German Cancer Consortium (DKTK) Division of Translational Cancer Research, German Cancer Research Center (DKFZ), , Heidelberg, 69120, Germanyand","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083128670","display_name":"Fabian J. Theis","orcid":"https://orcid.org/0000-0002-2419-1943"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian J Theis","raw_affiliation_strings":["Institute of Computational Biology, Helmholtz Center , Munich,","School of Computing, Information and Technology, Technical University of Munich , Munich,","TUM School of Life Sciences Weihenstephan, Technical University of Munich , Munich,","TUM School of Life Sciences Weihenstephan, Technical University of Munich, Germany","Institute of Computational Biology, Helmholtz Center Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center , Munich,","institution_ids":["https://openalex.org/I3018134672"]},{"raw_affiliation_string":"School of Computing, Information and Technology, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan, Technical University of Munich , Munich,","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM School of Life Sciences Weihenstephan, Technical University of Munich, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Computational Biology, Helmholtz Center Munich, Germany","institution_ids":["https://openalex.org/I3018134672"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909","https://openalex.org/I2802619606","https://openalex.org/I3018134672","https://openalex.org/I62916508"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28858944,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2223999947309494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.2223999947309494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.08760000020265579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.027300000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8252000212669373},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7211999893188477},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.675599992275238},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47380000352859497},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.4668999910354614},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.45649999380111694},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.45190000534057617},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.3357999920845032}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8252000212669373},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.798799991607666},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7211999893188477},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.675599992275238},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.557200014591217},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47380000352859497},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.4668999910354614},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.45649999380111694},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.45190000534057617},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.37279999256134033},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.3357999920845032},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3206000030040741},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.3179999887943268},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3140000104904175},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.305400013923645},{"id":"https://openalex.org/C73752529","wikidata":"https://www.wikidata.org/wiki/Q79872","display_name":"Object-oriented programming","level":2,"score":0.2928999960422516},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.28850001096725464},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.2863999903202057},{"id":"https://openalex.org/C199519371","wikidata":"https://www.wikidata.org/wiki/Q942695","display_name":"Source lines of code","level":3,"score":0.27390000224113464},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.26499998569488525},{"id":"https://openalex.org/C2988963302","wikidata":"https://www.wikidata.org/wiki/Q629206","display_name":"Program code","level":2,"score":0.2624000012874603},{"id":"https://openalex.org/C76518257","wikidata":"https://www.wikidata.org/wiki/Q271680","display_name":"Software framework","level":5,"score":0.2623000144958496},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.25540000200271606}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf607","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf607","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf607/65270268/btaf607.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41217759","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41217759","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12684725","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12684725/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf607","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf607","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf607/65270268/btaf607.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1796449573","display_name":null,"funder_award_id":"#70115743","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"},{"id":"https://openalex.org/G1883933075","display_name":null,"funder_award_id":"1374/8-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G208820641","display_name":null,"funder_award_id":"515991405","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2237290774","display_name":null,"funder_award_id":"2017.091.2","funder_id":"https://openalex.org/F4320310707","funder_display_name":"Wilhelm Sander-Stiftung"},{"id":"https://openalex.org/G2633817369","display_name":null,"funder_award_id":"538132723","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G2697966662","display_name":null,"funder_award_id":"SA 1374/11-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3219141756","display_name":null,"funder_award_id":"70115743","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"},{"id":"https://openalex.org/G3707397737","display_name":null,"funder_award_id":"SA 1374/8-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G385209353","display_name":null,"funder_award_id":"515571394","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G4145895753","display_name":null,"funder_award_id":"#70117118","funder_id":"https://openalex.org/F4320323556","funder_display_name":"Deutsche Krebshilfe"},{"id":"https://openalex.org/G5750584375","display_name":null,"funder_award_id":"2020.174.1","funder_id":"https://openalex.org/F4320310707","funder_display_name":"Wilhelm Sander-Stiftung"},{"id":"https://openalex.org/G6743243744","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6777869726","display_name":null,"funder_award_id":"458890590","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G784663927","display_name":null,"funder_award_id":"1374/6-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7900265844","display_name":null,"funder_award_id":"1374/7-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8235906861","display_name":null,"funder_award_id":"395357507","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320310707","display_name":"Wilhelm Sander-Stiftung","ror":"https://ror.org/02q83sc19"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323556","display_name":"Deutsche Krebshilfe","ror":"https://ror.org/01wxdd722"},{"id":"https://openalex.org/F4320327569","display_name":"Deutschen Konsortium f\u00fcr Translationale Krebsforschung","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4416122171.pdf","grobid_xml":"https://content.openalex.org/works/W4416122171.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1967350125","https://openalex.org/W1980073965","https://openalex.org/W2036897871","https://openalex.org/W2099964107","https://openalex.org/W2116699248","https://openalex.org/W2121016876","https://openalex.org/W2124985265","https://openalex.org/W2157539385","https://openalex.org/W2561754210","https://openalex.org/W2796538159","https://openalex.org/W2898075889","https://openalex.org/W2902451951","https://openalex.org/W2953174564","https://openalex.org/W3002219094","https://openalex.org/W3003119869","https://openalex.org/W3130937819","https://openalex.org/W3148807116","https://openalex.org/W3169899682","https://openalex.org/W3187309064","https://openalex.org/W3201416000","https://openalex.org/W4200432640","https://openalex.org/W4213458181","https://openalex.org/W4214876469","https://openalex.org/W4220765071","https://openalex.org/W4281716291","https://openalex.org/W4292202196","https://openalex.org/W4312181441","https://openalex.org/W4362521490","https://openalex.org/W4366977075","https://openalex.org/W4384819865","https://openalex.org/W4387012711","https://openalex.org/W4387043507","https://openalex.org/W4390498099","https://openalex.org/W4395478030","https://openalex.org/W4401322700","https://openalex.org/W4402135155","https://openalex.org/W4402902773","https://openalex.org/W4403949117","https://openalex.org/W4407565849","https://openalex.org/W4407896879","https://openalex.org/W4408004047"],"related_works":[],"abstract_inverted_index":{"QuiCAT":[0],"is":[1,13],"available":[2,14],"as":[3],"a":[4],"Python":[5],"package":[6],"to":[7],"be":[8],"installed.":[9],"The":[10],"source":[11],"code":[12],"at":[15],"https://github.com/theislab/quicat.":[16]},"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-11-11T00:00:00"}