{"id":"https://openalex.org/W4415405753","doi":"https://doi.org/10.1093/bioinformatics/btaf574","title":"aPhyloGeo: a Python application for correlating genetic and climatic conditions","display_name":"aPhyloGeo: a Python application for correlating genetic and climatic conditions","publication_year":2025,"publication_date":"2025-10-21","ids":{"openalex":"https://openalex.org/W4415405753","doi":"https://doi.org/10.1093/bioinformatics/btaf574","pmid":"https://pubmed.ncbi.nlm.nih.gov/41121493"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf574","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120086390","display_name":"Ana Laura Chenoweth Galaz","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]},{"id":"https://openalex.org/I4061448","display_name":"Universidad de Sonora","ror":"https://ror.org/00c32gy34","country_code":"MX","type":"education","lineage":["https://openalex.org/I4061448"]}],"countries":["CA","MX"],"is_corresponding":true,"raw_author_name":"Ana Laura Chenoweth Galaz","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke , QC J1K 2R1, Sherbrooke,","Department of Mathematics, University of Sonora , 83000, Sonora,","Department of Mathematics, University of Sonora, Boulevard Luis Encinas and Rosales, Sonora 83000, Mexico","Department of Computer Science, University of Sherbrooke, QC J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke , QC J1K 2R1, Sherbrooke,","institution_ids":["https://openalex.org/I135117807"]},{"raw_affiliation_string":"Department of Mathematics, University of Sonora , 83000, Sonora,","institution_ids":["https://openalex.org/I4061448"]},{"raw_affiliation_string":"Department of Mathematics, University of Sonora, Boulevard Luis Encinas and Rosales, Sonora 83000, Mexico","institution_ids":["https://openalex.org/I4061448"]},{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, QC J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083583971","display_name":"Nadia Tahiri","orcid":"https://orcid.org/0000-0002-1818-208X"},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nadia Tahiri","raw_affiliation_strings":["Department of Computer Science, University of Sherbrooke , QC J1K 2R1, Sherbrooke,","Department of Computer Science, University of Sherbrooke, QC J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke , QC J1K 2R1, Sherbrooke,","institution_ids":["https://openalex.org/I135117807"]},{"raw_affiliation_string":"Department of Computer Science, University of Sherbrooke, QC J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5120086390"],"corresponding_institution_ids":["https://openalex.org/I135117807","https://openalex.org/I4061448"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.32018946,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.9753000140190125},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.8834999799728394},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.428600013256073},{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.35740000009536743},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.30399999022483826}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.9753000140190125},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.8834999799728394},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.791100025177002},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.7006000280380249},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.428600013256073},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.35740000009536743},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3059999942779541},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.30399999022483826},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.25099998712539673},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.2393999993801117}],"mesh":[{"descriptor_ui":"D002980","descriptor_name":"Climate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002980","descriptor_name":"Climate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058974","descriptor_name":"Phylogeography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41121493","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41121493","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11405060","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12596145","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf574","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf574","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1973965874","https://openalex.org/W1998025025","https://openalex.org/W2030966943","https://openalex.org/W2031611770","https://openalex.org/W2034970874","https://openalex.org/W2035939192","https://openalex.org/W2060425093","https://openalex.org/W2082317854","https://openalex.org/W2104898129","https://openalex.org/W2105329815","https://openalex.org/W2111647009","https://openalex.org/W2114850508","https://openalex.org/W2132926880","https://openalex.org/W2137015675","https://openalex.org/W2158549813","https://openalex.org/W2160378127","https://openalex.org/W2539821683","https://openalex.org/W2911038074","https://openalex.org/W2948115951","https://openalex.org/W2949867654","https://openalex.org/W3026218946","https://openalex.org/W3191427817","https://openalex.org/W4248231884","https://openalex.org/W4292223333","https://openalex.org/W4387933471","https://openalex.org/W4409074998"],"related_works":[],"abstract_inverted_index":{"aPhyloGeo":[0],"is":[1],"freely":[2],"available":[3],"on":[4],"GitHub":[5],"at:":[6],"https://github.com/tahiri-lab/aPhyloGeo,":[7],"as":[8,14],"both":[9],"a":[10],"PyPI":[11],"package":[12],"and":[13,20],"Python":[15],"scripts":[16],"for":[17],"Linux,":[18],"macOS,":[19],"Windows.":[21]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-22T00:00:00"}
