{"id":"https://openalex.org/W4415621364","doi":"https://doi.org/10.1093/bioinformatics/btaf563","title":"ConceptDrift: leveraging spatial, temporal and semantic evolution of biomedical concepts for hypothesis generation","display_name":"ConceptDrift: leveraging spatial, temporal and semantic evolution of biomedical concepts for hypothesis generation","publication_year":2025,"publication_date":"2025-10-28","ids":{"openalex":"https://openalex.org/W4415621364","doi":"https://doi.org/10.1093/bioinformatics/btaf563","pmid":"https://pubmed.ncbi.nlm.nih.gov/41148039"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf563","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf563/65004434/btaf563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf563/65004434/btaf563.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114638510","display_name":"Amir Hassan Shariatmadari","orcid":"https://orcid.org/0009-0002-6590-3748"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amir Hassan Shariatmadari","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","Department of Computer Science, University of Virginia, Virginia, 22903, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Computer Science, University of Virginia, Virginia, 22903, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060971381","display_name":"Alireza Jafari","orcid":"https://orcid.org/0000-0002-9079-1971"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alireza Jafari","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","Department of Computer Science, University of Virginia, Virginia, 22903, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Computer Science, University of Virginia, Virginia, 22903, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079456168","display_name":"Sikun Guo","orcid":"https://orcid.org/0000-0002-4764-3359"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sikun Guo","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","Department of Computer Science, University of Virginia, Virginia, 22903, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Computer Science, University of Virginia, Virginia, 22903, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101764128","display_name":"S. Srinivasan","orcid":"https://orcid.org/0009-0006-9759-9145"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sneha Srinivasan","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","Department of Computer Science, University of Virginia, Virginia, 22903, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Computer Science, University of Virginia, Virginia, 22903, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055872618","display_name":"Nathan C. Sheffield","orcid":"https://orcid.org/0000-0001-5643-4068"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan C Sheffield","raw_affiliation_strings":["Department of Genome Sciences, University of Virginia , Charlottesville, VA 22908,","Department of Genome Sciences, University of Virginia, Virginia, 22908, United States"],"affiliations":[{"raw_affiliation_string":"Department of Genome Sciences, University of Virginia , Charlottesville, VA 22908,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Genome Sciences, University of Virginia, Virginia, 22908, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013588572","display_name":"Aidong Zhang","orcid":"https://orcid.org/0000-0001-9723-3246"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aidong Zhang","raw_affiliation_strings":["Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","Department of Computer Science, University of Virginia, Virginia, 22903, United States"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Virginia , Charlottesville, VA 22903,","institution_ids":["https://openalex.org/I51556381"]},{"raw_affiliation_string":"Department of Computer Science, University of Virginia, Virginia, 22903, United States","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021740848","display_name":"Kishlay Jha","orcid":"https://orcid.org/0000-0003-0826-445X"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kishlay Jha","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of Iowa , Iowa City, IA 52242,","Department of Electrical and Computer Engineering, University of Iowa, Iowa, 52242, United States"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa , Iowa City, IA 52242,","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of Iowa, Iowa, 52242, United States","institution_ids":["https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5114638510"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.26993005,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7008000016212463,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7008000016212463,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.0892999991774559,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.05139999836683273,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.36309999227523804},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3199000060558319},{"id":"https://openalex.org/keywords/biological-evolution","display_name":"Biological evolution","score":0.24729999899864197},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.23579999804496765}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7797999978065491},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5246999859809875},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43050000071525574},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.36309999227523804},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3199000060558319},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2476000040769577},{"id":"https://openalex.org/C2988562018","wikidata":"https://www.wikidata.org/wiki/Q1063","display_name":"Biological evolution","level":2,"score":0.24729999899864197},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.23579999804496765},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22750000655651093},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.20309999585151672}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf563","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf563/65004434/btaf563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41148039","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41148039","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11391417","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12582365","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf563","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf563","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf563/65004434/btaf563.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7361606591","display_name":null,"funder_award_id":"2313865","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G761968847","display_name":"Collaborative Research: SCH: Personal Determinants of Health Enhanced Machine Learning Models for Early Prediction of Alzheimer's Disease and Related Dementias","funder_award_id":"2500341","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7826493304","display_name":null,"funder_award_id":"IIS-2106913","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G783310841","display_name":"III: Medium: Knowledge-Guided Meta Learning for Multi-Omics Survival Analysis","funder_award_id":"2106913","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415621364.pdf","grobid_xml":"https://content.openalex.org/works/W4415621364.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2011726136","https://openalex.org/W2015954361","https://openalex.org/W2087459698","https://openalex.org/W2118229453","https://openalex.org/W2911489562","https://openalex.org/W2921377602","https://openalex.org/W3028004046","https://openalex.org/W4205577341","https://openalex.org/W4301390757","https://openalex.org/W4385493803","https://openalex.org/W4390239758","https://openalex.org/W4391824822","https://openalex.org/W4393936594","https://openalex.org/W4399629030","https://openalex.org/W4399709509","https://openalex.org/W4400402753","https://openalex.org/W4401070514","https://openalex.org/W4401754055"],"related_works":[],"abstract_inverted_index":{"https://github.com/amir-hassan25/ConceptDrift":[0],"(DOI:":[1],"10.6084/m9.figshare.29975476).":[2]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-28T00:00:00"}
