{"id":"https://openalex.org/W4414559305","doi":"https://doi.org/10.1093/bioinformatics/btaf548","title":"GRUMB: a genome-resolved metagenomic framework for monitoring urban microbiomes and diagnosing pathogen risk","display_name":"GRUMB: a genome-resolved metagenomic framework for monitoring urban microbiomes and diagnosing pathogen risk","publication_year":2025,"publication_date":"2025-09-25","ids":{"openalex":"https://openalex.org/W4414559305","doi":"https://doi.org/10.1093/bioinformatics/btaf548","pmid":"https://pubmed.ncbi.nlm.nih.gov/41002268"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf548","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf548/64414851/btaf548.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf548/64414851/btaf548.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000971514","display_name":"Suleiman Aminu","orcid":"https://orcid.org/0000-0002-6520-8596"},"institutions":[{"id":"https://openalex.org/I12789410","display_name":"Ahmadu Bello University","ror":"https://ror.org/019apvn83","country_code":"NG","type":"education","lineage":["https://openalex.org/I12789410"]},{"id":"https://openalex.org/I4210131560","display_name":"Universit\u00e9 Mohammed VI Polytechnique","ror":"https://ror.org/03xc55g68","country_code":"MA","type":"education","lineage":["https://openalex.org/I4210131560"]}],"countries":["MA","NG"],"is_corresponding":true,"raw_author_name":"Suleiman Aminu","raw_affiliation_strings":["College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","Department of Biochemistry , Ahmadu Bello University , Zaria, Kaduna, 1096,","Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150","Ahmadu Bello University Department of Biochemistry, , Zaria, Kaduna Nigeria P.M.B. 1096"],"affiliations":[{"raw_affiliation_string":"College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","institution_ids":["https://openalex.org/I4210131560"]},{"raw_affiliation_string":"Department of Biochemistry , Ahmadu Bello University , Zaria, Kaduna, 1096,","institution_ids":["https://openalex.org/I12789410"]},{"raw_affiliation_string":"Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150","institution_ids":["https://openalex.org/I4210131560"]},{"raw_affiliation_string":"Ahmadu Bello University Department of Biochemistry, , Zaria, Kaduna Nigeria P.M.B. 1096","institution_ids":["https://openalex.org/I12789410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092404803","display_name":"AbdulAziz Ascandari","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131560","display_name":"Universit\u00e9 Mohammed VI Polytechnique","ror":"https://ror.org/03xc55g68","country_code":"MA","type":"education","lineage":["https://openalex.org/I4210131560"]}],"countries":["MA"],"is_corresponding":false,"raw_author_name":"AbdulAziz Ascandari","raw_affiliation_strings":["College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150"],"affiliations":[{"raw_affiliation_string":"College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","institution_ids":["https://openalex.org/I4210131560"]},{"raw_affiliation_string":"Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150","institution_ids":["https://openalex.org/I4210131560"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113068684","display_name":"Rachid Benhida","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086528","display_name":"Institut de Chimie de Nice","ror":"https://ror.org/000pvc513","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I201841394","https://openalex.org/I4210086528","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I4210131560","display_name":"Universit\u00e9 Mohammed VI Polytechnique","ror":"https://ror.org/03xc55g68","country_code":"MA","type":"education","lineage":["https://openalex.org/I4210131560"]}],"countries":["FR","MA"],"is_corresponding":false,"raw_author_name":"Rachid Benhida","raw_affiliation_strings":["College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","Institut de Chimie de Nice (ICN) , UMR CNRS 7272, Universit\u00e9 C\u00f4te d\u2019Azur , Nice, Provence-Alpes-C\u00f4te d\u2019Azur, 06108,","Universit\u00e9 C\u00f4te d\u2019Azur Institut de Chimie de Nice, CNRS UMR 7272, , Nice,","Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150"],"affiliations":[{"raw_affiliation_string":"College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","institution_ids":["https://openalex.org/I4210131560"]},{"raw_affiliation_string":"Institut de Chimie de Nice (ICN) , UMR CNRS 7272, Universit\u00e9 C\u00f4te d\u2019Azur , Nice, Provence-Alpes-C\u00f4te d\u2019Azur, 06108,","institution_ids":["https://openalex.org/I4210086528"]},{"raw_affiliation_string":"Universit\u00e9 C\u00f4te d\u2019Azur Institut de Chimie de Nice, CNRS UMR 7272, , Nice,","institution_ids":["https://openalex.org/I4210086528"]},{"raw_affiliation_string":"Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150","institution_ids":["https://openalex.org/I4210131560"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064836848","display_name":"Rachid Daoud","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131560","display_name":"Universit\u00e9 Mohammed VI Polytechnique","ror":"https://ror.org/03xc55g68","country_code":"MA","type":"education","lineage":["https://openalex.org/I4210131560"]}],"countries":["MA"],"is_corresponding":false,"raw_author_name":"Rachid Daoud","raw_affiliation_strings":["College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150"],"affiliations":[{"raw_affiliation_string":"College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS) , Mohammed VI Polytechnic University (UM6P) , Benguerir, 43150, Morocco","institution_ids":["https://openalex.org/I4210131560"]},{"raw_affiliation_string":"Mohammed VI Polytechnic University (UM6P) College of Chemical Sciences and Engineering (CCSE), Chemical and Biochemical Sciences (CBS), , Benguerir, Morocco 43150","institution_ids":["https://openalex.org/I4210131560"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000971514"],"corresponding_institution_ids":["https://openalex.org/I12789410","https://openalex.org/I4210131560"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6146,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85423591,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"41","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8313999772071838},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7450000047683716},{"id":"https://openalex.org/keywords/license","display_name":"License","score":0.5519999861717224},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.5519999861717224},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.5242999792098999},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.46129998564720154}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8313999772071838},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7450000047683716},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5519999861717224},{"id":"https://openalex.org/C2780560020","wikidata":"https://www.wikidata.org/wiki/Q79719","display_name":"License","level":2,"score":0.5519999861717224},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5497999787330627},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.5242999792098999},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4921000003814697},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.46129998564720154},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4043000042438507},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.35929998755455017},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3070000112056732},{"id":"https://openalex.org/C2984968299","wikidata":"https://www.wikidata.org/wiki/Q1077784","display_name":"Software tool","level":3,"score":0.2969000041484833},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.2565999925136566}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002947","descriptor_name":"Cities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002947","descriptor_name":"Cities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002947","descriptor_name":"Cities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002947","descriptor_name":"Cities","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054892","descriptor_name":"Metagenome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf548","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf548/64414851/btaf548.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:41002268","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41002268","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-05406958v1","is_oa":false,"landing_page_url":"https://hal.science/hal-05406958","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2025, 41 (10), &#x27E8;10.1093/bioinformatics/btaf548&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:11355790","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12548037","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf548","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf548","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf548/64414851/btaf548.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316682","display_name":"Universit\u00e9 Mohammed VI Polytechnique","ror":"https://ror.org/03xc55g68"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414559305.pdf"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W2045204781","https://openalex.org/W2146512944","https://openalex.org/W2345658906","https://openalex.org/W2599417231","https://openalex.org/W2730233141","https://openalex.org/W2765281411","https://openalex.org/W2888547849","https://openalex.org/W2900102202","https://openalex.org/W2938868597","https://openalex.org/W2950464960","https://openalex.org/W2990618091","https://openalex.org/W2991615383","https://openalex.org/W3012254361","https://openalex.org/W3036934263","https://openalex.org/W3039050216","https://openalex.org/W3163970933","https://openalex.org/W3174993126","https://openalex.org/W4210434591","https://openalex.org/W4210472216","https://openalex.org/W4225972470","https://openalex.org/W4306871314","https://openalex.org/W4310611359","https://openalex.org/W4310706834","https://openalex.org/W4385302529","https://openalex.org/W4385406776","https://openalex.org/W4386910458","https://openalex.org/W4387665843","https://openalex.org/W4388997323","https://openalex.org/W4389223334","https://openalex.org/W4396620719","https://openalex.org/W4401435602","https://openalex.org/W4402538076","https://openalex.org/W4406871736","https://openalex.org/W4408413975"],"related_works":[],"abstract_inverted_index":{"GRUMB":[0],"is":[1],"freely":[2],"available":[3],"under":[4],"the":[5],"MIT":[6],"License":[7],"at:":[8],"https://github.com/SuleimanAminu/genome-resolved-urban-microbiome-biosurveillance;":[9],"Zenodo":[10],"DOI:":[11],"https://doi.org/10.5281/zenodo.15505402.":[12],"Requirements:":[13],"Linux":[14],"(Ubuntu":[15],"20.04+),":[16],"Python":[17],"3.11,":[18],"R":[19],"4.2+,":[20],"SLURM.":[21],"Issues":[22],"and":[23],"feature":[24],"requests":[25],"are":[26],"tracked":[27],"on":[28],"GitHub.":[29]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
