{"id":"https://openalex.org/W4414458008","doi":"https://doi.org/10.1093/bioinformatics/btaf531","title":"SPAED: harnessing AlphaFold output for accurate segmentation of phage endolysin domains","display_name":"SPAED: harnessing AlphaFold output for accurate segmentation of phage endolysin domains","publication_year":2025,"publication_date":"2025-09-24","ids":{"openalex":"https://openalex.org/W4414458008","doi":"https://doi.org/10.1093/bioinformatics/btaf531","pmid":"https://pubmed.ncbi.nlm.nih.gov/40991341"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf531","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf531/64373687/btaf531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf531/64373687/btaf531.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115734251","display_name":"Alexandre Boulay","orcid":null},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210112049","display_name":"Nutrition & Sant\u00e9 (Spain)","ror":"https://ror.org/02tx52885","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210112049"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["BE","CA","ES"],"is_corresponding":true,"raw_author_name":"Alexandre Boulay","raw_affiliation_strings":["Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Department of Biotechnology, Ghent University , Ghent B-9000,","D\u00e9partement de biochimie, de microbiologie et de bio-informatique, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Universit\u00e9 Laval D\u00e9partement de biochimie, de microbiologie et de bio-informatique, , Qu\u00e9bec, QC","Department of Biotechnology, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I4210112049"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University , Ghent B-9000,","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]},{"raw_affiliation_string":"D\u00e9partement de biochimie, de microbiologie et de bio-informatique, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval D\u00e9partement de biochimie, de microbiologie et de bio-informatique, , Qu\u00e9bec, QC","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093275876","display_name":"Emma Cremelie","orcid":"https://orcid.org/0000-0003-0957-1443"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Emma Cremelie","raw_affiliation_strings":["Department of Biotechnology, Ghent University , Ghent B-9000,","Department of Biotechnology, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Ghent University , Ghent B-9000,","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065367548","display_name":"Clovis Galiez","orcid":null},"institutions":[{"id":"https://openalex.org/I106785703","display_name":"Institut polytechnique de Grenoble","ror":"https://ror.org/05sbt2524","country_code":"FR","type":"education","lineage":["https://openalex.org/I106785703","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210149092","display_name":"Laboratoire Jean Kuntzmann","ror":"https://ror.org/04ett5b41","country_code":"FR","type":"facility","lineage":["https://openalex.org/I106785703","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210149092","https://openalex.org/I899635006","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I899635006","display_name":"Universit\u00e9 Grenoble Alpes","ror":"https://ror.org/02rx3b187","country_code":"FR","type":"education","lineage":["https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Clovis Galiez","raw_affiliation_strings":["Univ. Grenoble Alpes, CNRS, Grenoble INP, LJK , Grenoble 38000,","Univ. Grenoble Alpes, CNRS, Grenoble INP, LJK, Grenoble, 38000, France"],"affiliations":[{"raw_affiliation_string":"Univ. Grenoble Alpes, CNRS, Grenoble INP, LJK , Grenoble 38000,","institution_ids":["https://openalex.org/I4210149092","https://openalex.org/I1294671590","https://openalex.org/I899635006","https://openalex.org/I106785703"]},{"raw_affiliation_string":"Univ. Grenoble Alpes, CNRS, Grenoble INP, LJK, Grenoble, 38000, France","institution_ids":["https://openalex.org/I4210149092","https://openalex.org/I1294671590","https://openalex.org/I899635006","https://openalex.org/I106785703"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056367492","display_name":"Yves Briers","orcid":"https://orcid.org/0000-0001-7723-1040"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Yves Briers","raw_affiliation_strings":["Department of Biotechnology, Ghent University , Ghent B-9000,","Department of Biotechnology, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Ghent University , Ghent B-9000,","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018522008","display_name":"Elsa Rousseau","orcid":"https://orcid.org/0000-0001-7013-6024"},"institutions":[{"id":"https://openalex.org/I4210112049","display_name":"Nutrition & Sant\u00e9 (Spain)","ror":"https://ror.org/02tx52885","country_code":"ES","type":"company","lineage":["https://openalex.org/I4210112049"]},{"id":"https://openalex.org/I4210161954","display_name":"D\u00e9partement d'Informatique","ror":"https://ror.org/05y6rqs46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210159245","https://openalex.org/I4210161954"]},{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA","ES","FR"],"is_corresponding":false,"raw_author_name":"Elsa Rousseau","raw_affiliation_strings":["Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Centre de Recherche en Donn\u00e9es Massives (CRDM), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V OA6,","D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Institut Intelligence et Donn\u00e9es (IID), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Universit\u00e9 Laval Institut Intelligence et Donn\u00e9es (IID), , Qu\u00e9bec, QC","D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , Qu\u00e9bec, QC"],"affiliations":[{"raw_affiliation_string":"Centre Nutrition, Sant\u00e9 et Soci\u00e9t\u00e9 (NUTRISS), Institute of Nutrition and Functional Foods (INAF), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I4210112049"]},{"raw_affiliation_string":"Centre de Recherche en Donn\u00e9es Massives (CRDM), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V OA6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institut Intelligence et Donn\u00e9es (IID), Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval Institut Intelligence et Donn\u00e9es (IID), , Qu\u00e9bec, QC","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"D\u00e9partement d\u2019informatique et de g\u00e9nie logiciel, Universit\u00e9 Laval , Qu\u00e9bec, QC","institution_ids":["https://openalex.org/I43406934","https://openalex.org/I4210161954"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039966065","display_name":"Roberto V\u00e1zquez","orcid":"https://orcid.org/0000-0002-7919-552X"},"institutions":[{"id":"https://openalex.org/I12607205","display_name":"University College Ghent","ror":"https://ror.org/00rs45z86","country_code":"BE","type":"education","lineage":["https://openalex.org/I12607205"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I4210099160","display_name":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias","ror":"https://ror.org/0119pby33","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801357902","https://openalex.org/I4210099160","https://openalex.org/I4210115082","https://openalex.org/I4387152914"]}],"countries":["BE","ES"],"is_corresponding":false,"raw_author_name":"Roberto V\u00e1zquez","raw_affiliation_strings":["Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES) , Madrid 28029,","Department of Biotechnology, Ghent University , Ghent B-9000,","Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES) , Madrid,","Department of Biotechnology, Ghent University, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES) , Madrid 28029,","institution_ids":["https://openalex.org/I4210099160"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University , Ghent B-9000,","institution_ids":["https://openalex.org/I32597200","https://openalex.org/I12607205"]},{"raw_affiliation_string":"Centro de Investigaci\u00f3n Biom\u00e9dica en Red de Enfermedades Respiratorias (CIBERES) , Madrid,","institution_ids":["https://openalex.org/I4210099160"]},{"raw_affiliation_string":"Department of Biotechnology, Ghent University, Ghent, Belgium","institution_ids":["https://openalex.org/I32597200"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5115734251"],"corresponding_institution_ids":["https://openalex.org/I12607205","https://openalex.org/I32597200","https://openalex.org/I4210112049","https://openalex.org/I43406934"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6146,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85365825,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"41","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lysin","display_name":"Lysin","score":0.6470999717712402},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5325000286102295},{"id":"https://openalex.org/keywords/bacteriophage","display_name":"Bacteriophage","score":0.35440000891685486},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3018999993801117},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.2784000039100647}],"concepts":[{"id":"https://openalex.org/C22538091","wikidata":"https://www.wikidata.org/wiki/Q2646830","display_name":"Lysin","level":5,"score":0.6470999717712402},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5945000052452087},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5454999804496765},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5325000286102295},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4474000036716461},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4131999909877777},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.35440000891685486},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3018999993801117},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.2784000039100647},{"id":"https://openalex.org/C16910744","wikidata":"https://www.wikidata.org/wiki/Q7705759","display_name":"Test data","level":2,"score":0.27790001034736633},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27559998631477356},{"id":"https://openalex.org/C149810388","wikidata":"https://www.wikidata.org/wiki/Q5374873","display_name":"Emulation","level":2,"score":0.27559998631477356},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.25049999356269836}],"mesh":[{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D001435","descriptor_name":"Bacteriophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D010450","descriptor_name":"Endopeptidases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010450","descriptor_name":"Endopeptidases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010450","descriptor_name":"Endopeptidases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D010450","descriptor_name":"Endopeptidases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf531","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf531/64373687/btaf531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40991341","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40991341","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:01K62W21CWZDD1N3QHWXJCV979","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-01K62W21CWZDD1N3QHWXJCV979","pdf_url":"https://biblio.ugent.be/publication/01K62W21CWZDD1N3QHWXJCV979/file/01K8AY80ETQ2FN06NTXTK6FHW0.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4811","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:11326695","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12518921","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf531","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf531","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf531/64373687/btaf531.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1679865357","display_name":null,"funder_award_id":"Mitacs","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G1718774004","display_name":null,"funder_award_id":"Junior","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G3069699328","display_name":null,"funder_award_id":"https","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G3231420740","display_name":null,"funder_award_id":"postdoc","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G3969759488","display_name":null,"funder_award_id":"program","funder_id":"https://openalex.org/F4320322675","funder_display_name":"Mitacs"},{"id":"https://openalex.org/G4472667909","display_name":null,"funder_award_id":"CREATE","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5599836742","display_name":null,"funder_award_id":"01P10022","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"},{"id":"https://openalex.org/G6427064400","display_name":null,"funder_award_id":"Bijzonder Onderzoeksfonds","funder_id":"https://openalex.org/F4320322603","funder_display_name":"Universiteit Gent"},{"id":"https://openalex.org/G6467675658","display_name":null,"funder_award_id":"307935","funder_id":"https://openalex.org/F4320334618","funder_display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9"},{"id":"https://openalex.org/G7278595174","display_name":null,"funder_award_id":"1S15424N","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8353403713","display_name":null,"funder_award_id":"Globalink","funder_id":"https://openalex.org/F4320322675","funder_display_name":"Mitacs"}],"funders":[{"id":"https://openalex.org/F4320320916","display_name":"European Society of Clinical Microbiology and Infectious Diseases","ror":"https://ror.org/02vkssr45"},{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322603","display_name":"Universiteit Gent","ror":"https://ror.org/00cv9y106"},{"id":"https://openalex.org/F4320322675","display_name":"Mitacs","ror":"https://ror.org/00cjrc276"},{"id":"https://openalex.org/F4320327336","display_name":"Vlaamse regering","ror":null},{"id":"https://openalex.org/F4320331257","display_name":"Alliance de recherche num\u00e9rique du Canada","ror":"https://ror.org/010r6td27"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320334618","display_name":"Fonds de Recherche du Qu\u00e9bec - Sant\u00e9","ror":"https://ror.org/02eqrsj93"},{"id":"https://openalex.org/F4320334841","display_name":"Fonds de recherche du Qu\u00e9bec \u2013 Nature et technologies","ror":"https://ror.org/00b9f9778"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4414458008.pdf","grobid_xml":"https://content.openalex.org/works/W4414458008.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1871676704","https://openalex.org/W1979132333","https://openalex.org/W2015642465","https://openalex.org/W2019197162","https://openalex.org/W2026292570","https://openalex.org/W2057820165","https://openalex.org/W2125501682","https://openalex.org/W2130647858","https://openalex.org/W2138822574","https://openalex.org/W2153843103","https://openalex.org/W2771898872","https://openalex.org/W2963436022","https://openalex.org/W2969717682","https://openalex.org/W3003557640","https://openalex.org/W3015818344","https://openalex.org/W3127535326","https://openalex.org/W3130568791","https://openalex.org/W3174759005","https://openalex.org/W3177828909","https://openalex.org/W3198971594","https://openalex.org/W4226313562","https://openalex.org/W4281790889","https://openalex.org/W4283326616","https://openalex.org/W4286668853","https://openalex.org/W4289262185","https://openalex.org/W4312032102","https://openalex.org/W4319048420","https://openalex.org/W4383957026","https://openalex.org/W4389947479","https://openalex.org/W4390723926","https://openalex.org/W4396721167","https://openalex.org/W4396730528","https://openalex.org/W4399901391","https://openalex.org/W4401121850","https://openalex.org/W4409387847"],"related_works":[],"abstract_inverted_index":{"Implemented":[0],"in":[1],"Python,":[2],"SPAED":[3,23],"is":[4],"accessible":[5],"on":[6],"the":[7],"web":[8],"(https://spaed.ca)":[9],"and":[10],"available":[11],"for":[12],"download":[13],"from":[14],"https://github.com/Rousseau-Team/spaed":[15],"or":[16],"https://pypi.org/project/spaed.":[17],"The":[18],"data":[19],"used":[20],"to":[21],"test":[22],"can":[24],"be":[25],"found":[26],"at":[27],"https://doi.org/10.5281/zenodo.15285860.":[28]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}