{"id":"https://openalex.org/W4414378561","doi":"https://doi.org/10.1093/bioinformatics/btaf520","title":"KADAIF: an anomaly detection method for complex microbiome data","display_name":"KADAIF: an anomaly detection method for complex microbiome data","publication_year":2025,"publication_date":"2025-09-18","ids":{"openalex":"https://openalex.org/W4414378561","doi":"https://doi.org/10.1093/bioinformatics/btaf520","pmid":"https://pubmed.ncbi.nlm.nih.gov/40973672"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf520","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf520","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf520","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003792476","display_name":"Omri Peleg","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Omri Peleg","raw_affiliation_strings":["Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119686393","display_name":"Maya Raytan","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Maya Raytan","raw_affiliation_strings":["Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067539705","display_name":"Elhanan Borenstein","orcid":"https://orcid.org/0000-0003-3002-0945"},"institutions":[{"id":"https://openalex.org/I1308548392","display_name":"Santa Fe Institute","ror":"https://ror.org/01arysc35","country_code":"US","type":"funder","lineage":["https://openalex.org/I1308548392"]},{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4210153392","display_name":"The Mofet Institute","ror":"https://ror.org/044356j33","country_code":"IL","type":"education","lineage":["https://openalex.org/I4210153392"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Elhanan Borenstein","raw_affiliation_strings":["Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","Gray Faculty of Medical & Health Sciences, Tel Aviv University , Tel Aviv, 6997801,","Santa Fe Institute , Santa Fe, NM, 87501,","Tel Aviv, Israel, Santa Fe Institute, NM United States","Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel"],"affiliations":[{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University , Tel Aviv, 6997801,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Gray Faculty of Medical & Health Sciences, Tel Aviv University , Tel Aviv, 6997801,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Santa Fe Institute , Santa Fe, NM, 87501,","institution_ids":["https://openalex.org/I1308548392"]},{"raw_affiliation_string":"Tel Aviv, Israel, Santa Fe Institute, NM United States","institution_ids":["https://openalex.org/I1308548392","https://openalex.org/I4210153392"]},{"raw_affiliation_string":"Blavatnik School of Computer Science and AI, Tel Aviv University, Tel Aviv, Israel","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5003792476"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22045743,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11512","display_name":"Anomaly Detection Techniques and Applications","score":0.9818000197410583,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/anomaly-detection","display_name":"Anomaly detection","score":0.5828999876976013},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5303000211715698},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4754999876022339},{"id":"https://openalex.org/keywords/microbiome","display_name":"Microbiome","score":0.4401000142097473},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43549999594688416}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.671999990940094},{"id":"https://openalex.org/C739882","wikidata":"https://www.wikidata.org/wiki/Q3560506","display_name":"Anomaly detection","level":2,"score":0.5828999876976013},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5303000211715698},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4754999876022339},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4749000072479248},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.4401000142097473},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43549999594688416},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4348999857902527},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3555999994277954},{"id":"https://openalex.org/C12997251","wikidata":"https://www.wikidata.org/wiki/Q567560","display_name":"Anomaly (physics)","level":2,"score":0.3531999886035919},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3149000108242035},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2696000039577484},{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.2621999979019165}],"mesh":[{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069196","descriptor_name":"Gastrointestinal Microbiome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf520","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf520","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40973672","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40973672","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12757010","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12757010/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf520","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf520","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2782494299","display_name":null,"funder_award_id":"2435/19","funder_id":"https://openalex.org/F4320322252","funder_display_name":"Israel Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320322252","display_name":"Israel Science Foundation","ror":"https://ror.org/04sazxf24"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1672197616","https://openalex.org/W2020398205","https://openalex.org/W2089423792","https://openalex.org/W2096283457","https://openalex.org/W2103088074","https://openalex.org/W2126218947","https://openalex.org/W2128769815","https://openalex.org/W2131415145","https://openalex.org/W2152751713","https://openalex.org/W2163903604","https://openalex.org/W2296719434","https://openalex.org/W2334099820","https://openalex.org/W2344543878","https://openalex.org/W2600656194","https://openalex.org/W2749612575","https://openalex.org/W2769542288","https://openalex.org/W2794407684","https://openalex.org/W2797413896","https://openalex.org/W2806314581","https://openalex.org/W2886394267","https://openalex.org/W2892206041","https://openalex.org/W2899638272","https://openalex.org/W2900546243","https://openalex.org/W2903406988","https://openalex.org/W2912097776","https://openalex.org/W2943495289","https://openalex.org/W2949004447","https://openalex.org/W2963276645","https://openalex.org/W2969656958","https://openalex.org/W2972614519","https://openalex.org/W2979164675","https://openalex.org/W2990249310","https://openalex.org/W3001464562","https://openalex.org/W3010965312","https://openalex.org/W3013963233","https://openalex.org/W3014637289","https://openalex.org/W3015969729","https://openalex.org/W3021162952","https://openalex.org/W3083241614","https://openalex.org/W3108994080","https://openalex.org/W3129304410","https://openalex.org/W3162929654","https://openalex.org/W3171259862","https://openalex.org/W4206107981","https://openalex.org/W4213163295","https://openalex.org/W4246599841","https://openalex.org/W4280649077","https://openalex.org/W4281682105","https://openalex.org/W4306292546","https://openalex.org/W4310696458","https://openalex.org/W4361291297","https://openalex.org/W4367016885","https://openalex.org/W4383875372","https://openalex.org/W4385688674","https://openalex.org/W4399231422","https://openalex.org/W4401397379"],"related_works":[],"abstract_inverted_index":{"An":[0],"implementation":[1],"of":[2],"KADAIF,":[3],"as":[4,6],"well":[5],"all":[7],"the":[8,12],"code":[9],"used":[10],"for":[11],"analysis,":[13],"is":[14],"available":[15],"on":[16],"GitHub":[17],"(https://github.com/borenstein-lab/KADAIF).":[18]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
