{"id":"https://openalex.org/W4413950864","doi":"https://doi.org/10.1093/bioinformatics/btaf486","title":"MOLEonline: a web-based tool for analysing channels, tunnels, and pores (2025 update)","display_name":"MOLEonline: a web-based tool for analysing channels, tunnels, and pores (2025 update)","publication_year":2025,"publication_date":"2025-09-01","ids":{"openalex":"https://openalex.org/W4413950864","doi":"https://doi.org/10.1093/bioinformatics/btaf486","pmid":"https://pubmed.ncbi.nlm.nih.gov/40900630"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf486","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf486/64200183/btaf486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf486/64200183/btaf486.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040326443","display_name":"Tom\u00e1\u0161 Ra\u010dek","orcid":"https://orcid.org/0000-0002-0296-2452"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":true,"raw_author_name":"Tom\u00e1\u0161 Ra\u010dek","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119526242","display_name":"Du\u0161an Ve\u013ek\u00fd","orcid":null},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Du\u0161an Vel\u2019k\u00fd","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099430632","display_name":"Gabriela Bu\u010dekov\u00e1","orcid":"https://orcid.org/0009-0000-3623-718X"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Gabriela Bu\u010dekov\u00e1","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058084999","display_name":"Ond\u0159ej Schindler","orcid":"https://orcid.org/0000-0002-9047-0334"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ond\u0159ej Schindler","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035392838","display_name":"Ivana Huta\u0159ov\u00e1 Va\u0159ekov\u00e1","orcid":null},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]},{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ivana Huta\u0159ov\u00e1 Va\u0159ekov\u00e1","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","institution_ids":["https://openalex.org/I70703428"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,","institution_ids":["https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093251448","display_name":"Anna \u0160pa\u010dkov\u00e1","orcid":"https://orcid.org/0000-0001-7142-3092"},"institutions":[{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Anna \u0160pa\u010dkov\u00e1","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","institution_ids":["https://openalex.org/I70703428"]},{"raw_affiliation_string":"Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,","institution_ids":["https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067386434","display_name":"V\u00e1clav Bazgier","orcid":"https://orcid.org/0000-0003-3393-3010"},"institutions":[{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"V\u00e1clav Bazgier","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","institution_ids":["https://openalex.org/I70703428"]},{"raw_affiliation_string":"Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,","institution_ids":["https://openalex.org/I70703428"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049457524","display_name":"Karel Berka","orcid":"https://orcid.org/0000-0001-9472-2589"},"institutions":[{"id":"https://openalex.org/I70703428","display_name":"Palack\u00fd University Olomouc","ror":"https://ror.org/04qxnmv42","country_code":"CZ","type":"education","lineage":["https://openalex.org/I70703428"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Karel Berka","raw_affiliation_strings":["Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,"],"affiliations":[{"raw_affiliation_string":"Department of Physical Chemistry, Faculty of Science, Palack\u00fd University , 17. listopadu 1192/12 , 771 46 Olomouc,","institution_ids":["https://openalex.org/I70703428"]},{"raw_affiliation_string":"Palack\u00fd University Department of Physical Chemistry, Faculty of Science, , Olomouc, 771 46,","institution_ids":["https://openalex.org/I70703428"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051424845","display_name":"Radka Svobodov\u00e1 Va\u0159ekov\u00e1","orcid":"https://orcid.org/0000-0002-3840-8760"},"institutions":[{"id":"https://openalex.org/I1310815967","display_name":"Central European Institute of Technology","ror":"https://ror.org/01p7k1986","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967"]},{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]},{"id":"https://openalex.org/I4210090417","display_name":"Central European Institute of Technology \u2013 Masaryk University","ror":"https://ror.org/009nz6031","country_code":"CZ","type":"education","lineage":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Radka Svobodov\u00e1","raw_affiliation_strings":["CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic"],"affiliations":[{"raw_affiliation_string":"CEITEC\u2014Central European Institute of Technology, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I1310815967"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University , Kamenice 5 , 625 00 Brno,","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masaryk University CEITEC\u2014Central European Institute of Technology, , Brno, 625 00,","institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I4210090417"]},{"raw_affiliation_string":"National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, 625 00, Czech Republic","institution_ids":["https://openalex.org/I21449261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5040326443"],"corresponding_institution_ids":["https://openalex.org/I1310815967","https://openalex.org/I21449261","https://openalex.org/I4210090417"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7136,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72443097,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7895931005477905},{"id":"https://openalex.org/keywords/login","display_name":"Login","score":0.7881027460098267},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6149726510047913},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5992022752761841},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.5463637709617615},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.519374430179596},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5099726915359497},{"id":"https://openalex.org/keywords/mac-os","display_name":"Mac OS","score":0.477937251329422},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44220787286758423},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.43717247247695923},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.3938787579536438},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37148797512054443},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21955034136772156},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1696971356868744},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14247450232505798}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7895931005477905},{"id":"https://openalex.org/C113324615","wikidata":"https://www.wikidata.org/wiki/Q472302","display_name":"Login","level":2,"score":0.7881027460098267},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6149726510047913},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5992022752761841},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.5463637709617615},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.519374430179596},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5099726915359497},{"id":"https://openalex.org/C522133331","wikidata":"https://www.wikidata.org/wiki/Q43627","display_name":"Mac OS","level":3,"score":0.477937251329422},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44220787286758423},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.43717247247695923},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3938787579536438},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37148797512054443},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21955034136772156},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1696971356868744},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14247450232505798},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf486","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf486/64200183/btaf486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40900630","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40900630","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11258275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12448857","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12448857","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12448857/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf486","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf486","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf486/64200183/btaf486.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4178066241","display_name":null,"funder_award_id":"LM2023055","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"}],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320326548","display_name":"Masarykova Univerzita","ror":"https://ror.org/02j46qs45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413950864.pdf","grobid_xml":"https://content.openalex.org/works/W4413950864.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1987819535","https://openalex.org/W2006358281","https://openalex.org/W2057843068","https://openalex.org/W2060284478","https://openalex.org/W2099036724","https://openalex.org/W2137825366","https://openalex.org/W2140387095","https://openalex.org/W2171075097","https://openalex.org/W2523550430","https://openalex.org/W2561607416","https://openalex.org/W2771627141","https://openalex.org/W2802723872","https://openalex.org/W2904081408","https://openalex.org/W2942491534","https://openalex.org/W2944202352","https://openalex.org/W2944930475","https://openalex.org/W3106745904","https://openalex.org/W3159719254","https://openalex.org/W3166375275","https://openalex.org/W3182282819","https://openalex.org/W3215525867","https://openalex.org/W4310058955","https://openalex.org/W4388622554","https://openalex.org/W4403425553"],"related_works":["https://openalex.org/W4235220108","https://openalex.org/W4256170434","https://openalex.org/W4233948907","https://openalex.org/W4238894392","https://openalex.org/W4311722428","https://openalex.org/W2357607877","https://openalex.org/W4238771742","https://openalex.org/W4235839583","https://openalex.org/W4396833206","https://openalex.org/W2624709009"],"abstract_inverted_index":{"The":[0],"MOLEonline":[1],"application":[2],"is":[3,15],"freely":[4],"available":[5],"at":[6,17,23,27,29],"https://moleonline.cz":[7],"with":[8],"no":[9],"login":[10],"requirement,":[11],"its":[12],"source":[13],"code":[14],"stored":[16],"GitHub":[18],"under":[19],"the":[20],"MIT":[21],"licence":[22],"https://github.com/sb-ncbr/moleonline-web,":[24],"and":[25],"archived":[26],"Figshare":[28],"https://doi.org/10.6084/m9.figshare.29816174.":[30]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}