{"id":"https://openalex.org/W4413885442","doi":"https://doi.org/10.1093/bioinformatics/btaf483","title":"scPOEM: robust co-embedding of peaks and genes revealing peak\u2013gene regulation","display_name":"scPOEM: robust co-embedding of peaks and genes revealing peak\u2013gene regulation","publication_year":2025,"publication_date":"2025-09-01","ids":{"openalex":"https://openalex.org/W4413885442","doi":"https://doi.org/10.1093/bioinformatics/btaf483","pmid":"https://pubmed.ncbi.nlm.nih.gov/40889281"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf483","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf483/64176744/btaf483.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf483/64176744/btaf483.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066519862","display_name":"Yan Zhong","orcid":"https://orcid.org/0000-0003-2412-043X"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Zhong","raw_affiliation_strings":["KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China","East China Normal University KLATASDS-MOE, School of Statistics, , Shanghai,"],"affiliations":[{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"East China Normal University KLATASDS-MOE, School of Statistics, , Shanghai,","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113357327","display_name":"Yuntong Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuntong Hou","raw_affiliation_strings":["KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China"],"affiliations":[{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014958505","display_name":"Yongjian Yang","orcid":"https://orcid.org/0000-0002-4135-5014"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongjian Yang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University , College Station, TX 77843,","Texas A&M University Department of Electrical and Computer Engineering, , College Station, TX 77843,","Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, United States"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Texas A&M University Department of Electrical and Computer Engineering, , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, United States","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076215314","display_name":"Xinyue Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyue Zheng","raw_affiliation_strings":["KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China","East China Normal University KLATASDS-MOE, School of Statistics, , Shanghai,"],"affiliations":[{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University , Shanghai, 200062,","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"KLATASDS-MOE, School of Statistics, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]},{"raw_affiliation_string":"East China Normal University KLATASDS-MOE, School of Statistics, , Shanghai,","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059360459","display_name":"James J. Cai","orcid":"https://orcid.org/0000-0002-8081-6725"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James J Cai","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Texas A&M University , College Station, TX 77843,","Department of Veterinary Integrative Biosciences, Texas A&M University , College Station, TX 77843,","Interdisciplinary Program of Genetics, Texas A&M University , College Station, TX 77843,","Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, United States","Texas A&M University Interdisciplinary Program of Genetics, , College Station, TX 77843,","Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX 77843, United States","Texas A&M University Department of Electrical and Computer Engineering, , College Station, TX 77843,","Interdisciplinary Program of Genetics, Texas A&M University, College Station, TX 77843, United States","Texas A&M University Department of Veterinary Integrative Biosciences, , College Station, TX 77843,"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Veterinary Integrative Biosciences, Texas A&M University , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Interdisciplinary Program of Genetics, Texas A&M University , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843, United States","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Texas A&M University Interdisciplinary Program of Genetics, , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Department of Veterinary Integrative Biosciences, Texas A&M University, College Station, TX 77843, United States","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Texas A&M University Department of Electrical and Computer Engineering, , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Interdisciplinary Program of Genetics, Texas A&M University, College Station, TX 77843, United States","institution_ids":["https://openalex.org/I91045830"]},{"raw_affiliation_string":"Texas A&M University Department of Veterinary Integrative Biosciences, , College Station, TX 77843,","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5066519862"],"corresponding_institution_ids":["https://openalex.org/I66867065"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7625,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74975527,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"9","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.7211565375328064},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6930298209190369},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6306040287017822},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.6156826019287109},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5579981803894043},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.5134519338607788},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5024416446685791},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4650263786315918},{"id":"https://openalex.org/keywords/regulatory-sequence","display_name":"Regulatory sequence","score":0.43233582377433777},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4283342957496643},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.41895434260368347},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4164969325065613},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3889133334159851},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2667614817619324},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.11812329292297363},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09574577212333679}],"concepts":[{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7211565375328064},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6930298209190369},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6306040287017822},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.6156826019287109},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5579981803894043},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.5134519338607788},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5024416446685791},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4650263786315918},{"id":"https://openalex.org/C21592294","wikidata":"https://www.wikidata.org/wiki/Q3238407","display_name":"Regulatory sequence","level":4,"score":0.43233582377433777},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4283342957496643},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.41895434260368347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4164969325065613},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3889133334159851},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2667614817619324},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.11812329292297363},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09574577212333679}],"mesh":[{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081204","descriptor_name":"Chromatin Immunoprecipitation Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf483","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf483/64176744/btaf483.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40889281","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40889281","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11258698","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12449255","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12449255","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12449255/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf483","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf483/64176744/btaf483.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7009121769","display_name":null,"funder_award_id":"123013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G768629655","display_name":null,"funder_award_id":"12301336","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8316206084","display_name":null,"funder_award_id":"72331005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413885442.pdf","grobid_xml":"https://content.openalex.org/works/W4413885442.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W1499206957","https://openalex.org/W1979594866","https://openalex.org/W2031008935","https://openalex.org/W2097308346","https://openalex.org/W2117302958","https://openalex.org/W2133956851","https://openalex.org/W2135046866","https://openalex.org/W2147524392","https://openalex.org/W2222339343","https://openalex.org/W2345356016","https://openalex.org/W2553838260","https://openalex.org/W2887694579","https://openalex.org/W2887910040","https://openalex.org/W2899039095","https://openalex.org/W2902652978","https://openalex.org/W2911964244","https://openalex.org/W2997831639","https://openalex.org/W3097075523","https://openalex.org/W3131634425","https://openalex.org/W3210860076","https://openalex.org/W4223557148","https://openalex.org/W4294011888","https://openalex.org/W4296580702","https://openalex.org/W4309165889","https://openalex.org/W4316015790","https://openalex.org/W4320487182","https://openalex.org/W4368361703","https://openalex.org/W4378212544","https://openalex.org/W4378640029","https://openalex.org/W4378716051","https://openalex.org/W4384198561","https://openalex.org/W4388233540","https://openalex.org/W4393043593","https://openalex.org/W4394011009","https://openalex.org/W4394764901","https://openalex.org/W4400800727","https://openalex.org/W4401997224","https://openalex.org/W4402755343","https://openalex.org/W4402827865","https://openalex.org/W4406016759","https://openalex.org/W4406298382","https://openalex.org/W4408129839","https://openalex.org/W4410457362"],"related_works":["https://openalex.org/W3031027624","https://openalex.org/W2010571965","https://openalex.org/W3049162418","https://openalex.org/W2002709996","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2115810854","https://openalex.org/W2043274041","https://openalex.org/W2277277196"],"abstract_inverted_index":{"The":[0,9],"source":[1],"code":[2],"of":[3],"scPOEM":[4],"is":[5],"available":[6],"at":[7],"https://github.com/Houyt23/scPOEM.":[8],"datasets":[10],"can":[11],"be":[12],"obtained":[13],"from":[14],"the":[15],"10\u00d7":[16],"Genomics":[17],"(https://www.10xgenomics.com/datasets/pbmc-from-a-healthy-donor-granulocytes-removed-through-cell-sorting-10-k-1-standard-1-0-0)":[18],"and":[19,26],"GEO":[20],"database":[21],"under":[22],"access":[23],"codes":[24],"GSE194122":[25],"GSE239916.":[27]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
