{"id":"https://openalex.org/W4413396779","doi":"https://doi.org/10.1093/bioinformatics/btaf460","title":"PDP-Miner: an AI/ML tool to detect prophage tail proteins with depolymerase domains across thousands of bacterial genomes","display_name":"PDP-Miner: an AI/ML tool to detect prophage tail proteins with depolymerase domains across thousands of bacterial genomes","publication_year":2025,"publication_date":"2025-08-21","ids":{"openalex":"https://openalex.org/W4413396779","doi":"https://doi.org/10.1093/bioinformatics/btaf460","pmid":"https://pubmed.ncbi.nlm.nih.gov/40839215"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf460","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf460","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028728708","display_name":"Jeff Gauthier","orcid":"https://orcid.org/0000-0002-2523-2698"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Jeff Gauthier","raw_affiliation_strings":["D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Universit\u00e9 Laval Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, , Qu\u00e9bec, QC,","Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, , Qu\u00e9bec, QC,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115988995","display_name":"Irena Kukavica-Ibrulj","orcid":"https://orcid.org/0000-0003-4401-6373"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Irena Kukavica-Ibrulj","raw_affiliation_strings":["D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,","institution_ids":["https://openalex.org/I43406934"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058001103","display_name":"Roger C. L\u00e9vesque","orcid":"https://orcid.org/0000-0001-8315-5937"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Roger C Levesque","raw_affiliation_strings":["D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de Microbiologie, d\u2019Infectiologie et d\u2019Immunologie, Facult\u00e9 de M\u00e9decine, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Institut de Biologie Int\u00e9grative et des Syst\u00e8mes, Universit\u00e9 Laval , Qu\u00e9bec, QC, G1V 0A6,","institution_ids":["https://openalex.org/I43406934"]},{"raw_affiliation_string":"Universit\u00e9 Laval D\u00e9partement de microbiologie, d\u2019infectiologie et d\u2019immunologie, Facult\u00e9 de m\u00e9decine, , Qu\u00e9bec, QC,","institution_ids":["https://openalex.org/I43406934"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028728708"],"corresponding_institution_ids":["https://openalex.org/I43406934"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21679188,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prophage","display_name":"Prophage","score":0.7946373224258423},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5962386727333069},{"id":"https://openalex.org/keywords/bacteriophage","display_name":"Bacteriophage","score":0.5711808800697327},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5699162483215332},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5562129020690918},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5383123159408569},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49657756090164185},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.41635626554489136},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4106544852256775},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3125324845314026},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26996344327926636},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.22667613625526428},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.17249560356140137}],"concepts":[{"id":"https://openalex.org/C73445445","wikidata":"https://www.wikidata.org/wiki/Q1712327","display_name":"Prophage","level":5,"score":0.7946373224258423},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5962386727333069},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.5711808800697327},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5699162483215332},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5562129020690918},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5383123159408569},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49657756090164185},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41635626554489136},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4106544852256775},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3125324845314026},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26996344327926636},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.22667613625526428},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.17249560356140137}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072417","descriptor_name":"Protein Domains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D011549","descriptor_name":"Pseudomonas","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D017376","descriptor_name":"Viral Tail Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D039002","descriptor_name":"Prophages","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf460","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40839215","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40839215","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:11388749","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12579547","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf460","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf460","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W2090817404","https://openalex.org/W2119445362","https://openalex.org/W2120772351","https://openalex.org/W2132926880","https://openalex.org/W2136264360","https://openalex.org/W2146966776","https://openalex.org/W2150766693","https://openalex.org/W2165913026","https://openalex.org/W2558551622","https://openalex.org/W2768649360","https://openalex.org/W2897531714","https://openalex.org/W2910139188","https://openalex.org/W2941437619","https://openalex.org/W2989135569","https://openalex.org/W2999406779","https://openalex.org/W3023787861","https://openalex.org/W3095583226","https://openalex.org/W3175950262","https://openalex.org/W4206677002","https://openalex.org/W4213436485","https://openalex.org/W4296857144","https://openalex.org/W4304689343","https://openalex.org/W4309503005","https://openalex.org/W4309593283","https://openalex.org/W4310533105","https://openalex.org/W4317753333","https://openalex.org/W4377091239","https://openalex.org/W4378952272","https://openalex.org/W4385989001","https://openalex.org/W4387033902","https://openalex.org/W4387400528","https://openalex.org/W4400314143","https://openalex.org/W4401328222","https://openalex.org/W4407424534"],"related_works":["https://openalex.org/W2081926956","https://openalex.org/W2079934389","https://openalex.org/W4366771508","https://openalex.org/W2889029343","https://openalex.org/W2158406706","https://openalex.org/W4211043921","https://openalex.org/W2079327011","https://openalex.org/W4406715995","https://openalex.org/W1123777192","https://openalex.org/W2990021576"],"abstract_inverted_index":{"Source":[0],"code,":[1],"test":[2],"datasets":[3],"and":[4,17],"documentation":[5],"are":[6],"freely":[7],"available":[8],"for":[9],"download":[10],"at":[11],"http:///www.github.com/jeffgauthier/pdpminer.":[12],"This":[13],"software":[14],"is":[15],"free":[16],"open":[18],"source":[19],"under":[20],"the":[21],"GNU":[22],"General":[23],"Public":[24],"License":[25],"v3.0.":[26]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
