{"id":"https://openalex.org/W4412635660","doi":"https://doi.org/10.1093/bioinformatics/btaf419","title":"Enhancing and accelerating cell type deconvolution of large-scale spatial transcriptomics slices with dual network model","display_name":"Enhancing and accelerating cell type deconvolution of large-scale spatial transcriptomics slices with dual network model","publication_year":2025,"publication_date":"2025-07-24","ids":{"openalex":"https://openalex.org/W4412635660","doi":"https://doi.org/10.1093/bioinformatics/btaf419","pmid":"https://pubmed.ncbi.nlm.nih.gov/40704686"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf419","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf419/63839149/btaf419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf419/63839149/btaf419.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060216097","display_name":"Yong Zha","orcid":"https://orcid.org/0000-0002-0382-0990"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuhong Zha","raw_affiliation_strings":["Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University , Xi\u2019an, Shaanxi 710071,","School of Computer Science and Technology, Xidian University , Xi\u2019an, Shaanxi 710071,","Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,","Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University, Xi'an, Shaanxi 710071, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University , Xi\u2019an, Shaanxi 710071,","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University , Xi\u2019an, Shaanxi 710071,","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University, Xi'an, Shaanxi 710071, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008375535","display_name":"Shaoqing Feng","orcid":"https://orcid.org/0000-0002-8367-6510"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210097066","display_name":"Shanghai Ninth People's Hospital","ror":"https://ror.org/010826a91","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210097066"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shaoqing Feng","raw_affiliation_strings":["Department of Plastic and Reconstructive Surgery, Shanghai Ninth People\u2019s Hospital, Shanghai Jiaotong University , Shanghai 200011,","Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiaotong University, Shanghai 200011, China","Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,"],"affiliations":[{"raw_affiliation_string":"Department of Plastic and Reconstructive Surgery, Shanghai Ninth People\u2019s Hospital, Shanghai Jiaotong University , Shanghai 200011,","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Department of Plastic and Reconstructive Surgery, Shanghai Ninth People's Hospital, Shanghai Jiaotong University, Shanghai 200011, China","institution_ids":["https://openalex.org/I4210097066"]},{"raw_affiliation_string":"Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063548760","display_name":"Peng Gao","orcid":"https://orcid.org/0000-0002-7785-2389"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Gao","raw_affiliation_strings":["Department of Hematology, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710061,","Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710061,","Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China"],"affiliations":[{"raw_affiliation_string":"Department of Hematology, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710061,","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi\u2019an Jiaotong University , Xi\u2019an, Shaanxi 710061,","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Genome Institute, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi 710061, China","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073446170","display_name":"Q. Zou","orcid":"https://orcid.org/0000-0003-0038-5038"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, Sichuan 611731,","Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China","University of Electronic Science and Technology of China Institute of Fundamental and Frontier Sciences, , Chengdu, 611731, Sichuan,"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China , Chengdu, Sichuan 611731,","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, Sichuan 611731, China","institution_ids":["https://openalex.org/I150229711"]},{"raw_affiliation_string":"University of Electronic Science and Technology of China Institute of Fundamental and Frontier Sciences, , Chengdu, 611731, Sichuan,","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029088205","display_name":"Xiaoke Ma","orcid":"https://orcid.org/0000-0002-5604-7137"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoke Ma","raw_affiliation_strings":["Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University , Xi\u2019an, Shaanxi 710071,","School of Computer Science and Technology, Xidian University , Xi\u2019an, Shaanxi 710071,","Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University, Xi'an, Shaanxi 710071, China","Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University , Xi\u2019an, Shaanxi 710071,","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Computer Science and Technology, Xidian University , Xi\u2019an, Shaanxi 710071,","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, Xidian University, Xi'an, Shaanxi 710071, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Xidian University Key Laboratory of Smart Human-Computer Interaction and Wearable Technology of Shaanxi Province, , Xi\u2019an, 710071, Shaanxi,","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5060216097"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.6299,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84418915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"41","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9520000219345093,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9433000087738037,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/deconvolution","display_name":"Deconvolution","score":0.8829479217529297},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7764610648155212},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5228012800216675},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5032913088798523},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.4910006821155548},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4772879183292389},{"id":"https://openalex.org/keywords/matrix-decomposition","display_name":"Matrix decomposition","score":0.424045592546463},{"id":"https://openalex.org/keywords/aka","display_name":"AKA","score":0.4132232367992401},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3255929946899414},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2545945644378662},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09667864441871643}],"concepts":[{"id":"https://openalex.org/C174576160","wikidata":"https://www.wikidata.org/wiki/Q1183700","display_name":"Deconvolution","level":2,"score":0.8829479217529297},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7764610648155212},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5228012800216675},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5032913088798523},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.4910006821155548},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4772879183292389},{"id":"https://openalex.org/C42355184","wikidata":"https://www.wikidata.org/wiki/Q1361088","display_name":"Matrix decomposition","level":3,"score":0.424045592546463},{"id":"https://openalex.org/C121158502","wikidata":"https://www.wikidata.org/wiki/Q4652161","display_name":"AKA","level":2,"score":0.4132232367992401},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3255929946899414},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2545945644378662},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09667864441871643},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0},{"id":"https://openalex.org/C158693339","wikidata":"https://www.wikidata.org/wiki/Q190524","display_name":"Eigenvalues and eigenvectors","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf419","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf419/63839149/btaf419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40704686","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40704686","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12341680","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12341680","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf419","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf419","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf419/63839149/btaf419.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412635660.pdf"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1902027874","https://openalex.org/W2471536144","https://openalex.org/W2605512081","https://openalex.org/W2899224111","https://openalex.org/W2923300855","https://openalex.org/W2952383043","https://openalex.org/W3092450854","https://openalex.org/W3093858607","https://openalex.org/W3112563877","https://openalex.org/W3124439729","https://openalex.org/W3127422037","https://openalex.org/W3129476455","https://openalex.org/W3161009639","https://openalex.org/W3198511950","https://openalex.org/W4205817967","https://openalex.org/W4213238696","https://openalex.org/W4224218779","https://openalex.org/W4225272983","https://openalex.org/W4280533477","https://openalex.org/W4389246021","https://openalex.org/W4403853489","https://openalex.org/W4407839462","https://openalex.org/W4409129472","https://openalex.org/W4409180796","https://openalex.org/W4409800558","https://openalex.org/W4411687127","https://openalex.org/W6873079880"],"related_works":["https://openalex.org/W3014541132","https://openalex.org/W2994737807","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W2948639032","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W4250106855","https://openalex.org/W4297799326","https://openalex.org/W2037261263"],"abstract_inverted_index":{"The":[0],"software":[1],"is":[2,7],"coded":[3],"using":[4],"python,":[5],"and":[6],"free":[8],"available":[9],"for":[10],"academic":[11],"https://github.com/xkmaxidian/jMF2D.":[12]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
