{"id":"https://openalex.org/W4404574189","doi":"https://doi.org/10.1093/bioinformatics/btaf412","title":"bia-binder: a web-native cloud compute service for the bioimage analysis community","display_name":"bia-binder: a web-native cloud compute service for the bioimage analysis community","publication_year":2025,"publication_date":"2025-07-22","ids":{"openalex":"https://openalex.org/W4404574189","doi":"https://doi.org/10.1093/bioinformatics/btaf412","pmid":"https://pubmed.ncbi.nlm.nih.gov/39606735"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf412","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf412/63815014/btaf412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf412/63815014/btaf412.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084747017","display_name":"Craig Russell","orcid":"https://orcid.org/0000-0002-2447-5911"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","RU"],"is_corresponding":true,"raw_author_name":"Craig T Russell","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076169286","display_name":"Jean\u2010Marie Burel","orcid":"https://orcid.org/0000-0002-1789-1861"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jean-Marie Burel","raw_affiliation_strings":["School of Life Sciences, University of Dundee , Dundee DD1 4HN,","School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Dundee , Dundee DD1 4HN,","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026112642","display_name":"Awais Athar","orcid":"https://orcid.org/0000-0002-8873-8821"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Awais Athar","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101405806","display_name":"Simon Li","orcid":"https://orcid.org/0000-0002-7929-2442"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Li","raw_affiliation_strings":["School of Life Sciences, University of Dundee , Dundee DD1 4HN,","School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Dundee , Dundee DD1 4HN,","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074485826","display_name":"U\u011fis Sarkans","orcid":"https://orcid.org/0000-0001-9227-8488"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Ugis Sarkans","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087159664","display_name":"Jason R. Swedlow","orcid":"https://orcid.org/0000-0002-2198-1958"},"institutions":[{"id":"https://openalex.org/I177639307","display_name":"University of Dundee","ror":"https://ror.org/03h2bxq36","country_code":"GB","type":"education","lineage":["https://openalex.org/I177639307"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jason Swedlow","raw_affiliation_strings":["School of Life Sciences, University of Dundee , Dundee DD1 4HN,","School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Life Sciences, University of Dundee , Dundee DD1 4HN,","institution_ids":["https://openalex.org/I177639307"]},{"raw_affiliation_string":"School of Life Sciences, University of Dundee, Dundee DD1 4HN, United Kingdom","institution_ids":["https://openalex.org/I177639307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081419327","display_name":"Alvis Br\u0101zma","orcid":"https://orcid.org/0000-0001-5988-7409"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I141777705","display_name":"Latvian Biomedical Research and Study Centre","ror":"https://ror.org/01gckhp53","country_code":"LV","type":"facility","lineage":["https://openalex.org/I141777705"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","LV","RU"],"is_corresponding":false,"raw_author_name":"Alvis Brazma","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","One Health Informatics, Biomedical Research and Study Centre , Riga LV-1067,","One Health Informatics, Biomedical Research and Study Centre, Riga LV-1067, Latvia","One Health Informatics, Biomedical Research and Study Centre , Riga,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"One Health Informatics, Biomedical Research and Study Centre , Riga LV-1067,","institution_ids":["https://openalex.org/I141777705"]},{"raw_affiliation_string":"One Health Informatics, Biomedical Research and Study Centre, Riga LV-1067, Latvia","institution_ids":["https://openalex.org/I141777705"]},{"raw_affiliation_string":"One Health Informatics, Biomedical Research and Study Centre , Riga,","institution_ids":["https://openalex.org/I141777705"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090156957","display_name":"Matthew J. Hartley","orcid":"https://orcid.org/0000-0002-5239-3083"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["GB","RU"],"is_corresponding":false,"raw_author_name":"Matthew Hartley","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034638851","display_name":"Virginie Uhlmann","orcid":"https://orcid.org/0000-0002-2859-9241"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I4210118307","display_name":"Life Science Zurich","ror":"https://ror.org/02jxpdd90","country_code":"CH","type":"education","lineage":["https://openalex.org/I4210118307"]},{"id":"https://openalex.org/I4210137637","display_name":"Bioinformatics Institute","ror":"https://ror.org/04btxg914","country_code":"RU","type":"nonprofit","lineage":["https://openalex.org/I4210137637"]}],"countries":["CH","GB","RU"],"is_corresponding":false,"raw_author_name":"Virginie Uhlmann","raw_affiliation_strings":["Department of Molecular Life Sciences, University of Zurich , 8057 Zurich,","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","Department of Molecular Life Sciences, University of Zurich, 8057 Zurich, Switzerland","European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Life Sciences, University of Zurich , 8057 Zurich,","institution_ids":["https://openalex.org/I4210118307"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) , Cambridge CB10 1SD,","institution_ids":["https://openalex.org/I4210137637"]},{"raw_affiliation_string":"Department of Molecular Life Sciences, University of Zurich, 8057 Zurich, Switzerland","institution_ids":["https://openalex.org/I202697423"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Cambridge CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5084747017"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I4210137637"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00017849,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9714000225067139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9704999923706055,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8267410397529602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7182594537734985},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.5848013162612915},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.5760918259620667},{"id":"https://openalex.org/keywords/software-deployment","display_name":"Software deployment","score":0.5747493505477905},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.544718861579895},{"id":"https://openalex.org/keywords/service-oriented-architecture","display_name":"Service-oriented architecture","score":0.4821183681488037},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4703775942325592},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.4247239828109741},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.42456740140914917},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3689895272254944},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.1969013214111328},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17536285519599915},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.16929760575294495}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8267410397529602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7182594537734985},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5848013162612915},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.5760918259620667},{"id":"https://openalex.org/C105339364","wikidata":"https://www.wikidata.org/wiki/Q2297740","display_name":"Software deployment","level":2,"score":0.5747493505477905},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.544718861579895},{"id":"https://openalex.org/C57041688","wikidata":"https://www.wikidata.org/wiki/Q220644","display_name":"Service-oriented architecture","level":3,"score":0.4821183681488037},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4703775942325592},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.4247239828109741},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.42456740140914917},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3689895272254944},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.1969013214111328},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17536285519599915},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.16929760575294495},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1093/bioinformatics/btaf412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf412","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf412/63815014/btaf412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39606735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39606735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:40692175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40692175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:arXiv.org:2411.12662","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2411.12662","pdf_url":"https://arxiv.org/pdf/2411.12662","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire_cris_publications/588b1a4c-326f-40ef-9bb1-3a5faeffd6a1","is_oa":true,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/588b1a4c-326f-40ef-9bb1-3a5faeffd6a1","pdf_url":"https://discovery.dundee.ac.uk/ws/files/157832164/btaf412.pdf","source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Russell, C T, Burel, J M, Athar, A, Li, S, Sarkans, U, Swedlow, J, Brazma, A, Hartley, M & Uhlmann, V 2025, 'bia-binder : a web-native cloud compute service for the bioimage analysis community', Bioinformatics, vol. 41, no. 8, btaf412. https://doi.org/10.1093/bioinformatics/btaf412","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11601810","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11601810","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:doi:10.5167/uzh-284190","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"pmh:oai:pubmedcentral.nih.gov:12342736","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12342736","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"doi:10.48550/arxiv.2411.12662","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2411.12662","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf412","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf412","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf412/63815014/btaf412.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1479629964","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G2466810457","display_name":"BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata, and Value","funder_award_id":"BB/R015384/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G2687563341","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4533657402","display_name":null,"funder_award_id":"UM1HG011593","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4783475982","display_name":null,"funder_award_id":"101057970","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G5562500205","display_name":null,"funder_award_id":"212962/Z/18/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G5933564417","display_name":null,"funder_award_id":"824087","funder_id":"https://openalex.org/F4320319638","funder_display_name":"EOSC-Life"},{"id":"https://openalex.org/G7107694698","display_name":"Artificial Intelligence for Image Data Analysis in the Life Sciences","funder_award_id":"101057970","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"},{"id":"https://openalex.org/F4320319638","display_name":"EOSC-Life","ror":null},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323874","display_name":"Universit\u00e4t Z\u00fcrich","ror":"https://ror.org/02crff812"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404574189.pdf"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1974694769","https://openalex.org/W2120575449","https://openalex.org/W2167279371","https://openalex.org/W2302501749","https://openalex.org/W2641905542","https://openalex.org/W2765161617","https://openalex.org/W2892221324","https://openalex.org/W2950501364","https://openalex.org/W2952481429","https://openalex.org/W2991144311","https://openalex.org/W3048087138","https://openalex.org/W3156859314","https://openalex.org/W3198842780","https://openalex.org/W4205409093","https://openalex.org/W4212959882","https://openalex.org/W4286462293","https://openalex.org/W4397009248"],"related_works":["https://openalex.org/W1546980300","https://openalex.org/W2013343621","https://openalex.org/W4246898356","https://openalex.org/W100127945","https://openalex.org/W2994043954","https://openalex.org/W2898818629","https://openalex.org/W109358238","https://openalex.org/W1982098960","https://openalex.org/W2136457176","https://openalex.org/W2149151245"],"abstract_inverted_index":{"We":[0,73],"introduce":[1],"bia-binder":[2,43,95,117],"(BioImage":[3],"Archive":[4],"Binder),":[5],"an":[6],"open-source,":[7],"cloud-architectured,":[8],"and":[9,48,56,69,113,120,124,126,138],"web-based":[10],"coding":[11,30,101],"environment":[12],"tailored":[13],"to":[14,21,59,89,99,107],"bioimage":[15],"analysis":[16],"that":[17,75],"is":[18,45,118],"freely":[19],"accessible":[20],"all":[22],"researchers.":[23],"The":[24,42],"service":[25,77,106],"generates":[26],"easy-to-use":[27],"Jupyter":[28],"Notebook":[29],"environments":[31],"hosted":[32],"on":[33,140],"EMBL-EBI's":[34],"Embassy":[35],"Cloud,":[36],"which":[37],"provides":[38],"significant":[39],"computational":[40],"resources.":[41],"architecture":[44],"free,":[46],"open-source":[47],"publicly":[49],"available":[50],"for":[51],"deployment.":[52],"It":[53,132],"features":[54],"fast":[55],"direct":[57],"access":[58,88],"images":[60],"in":[61,82,87],"the":[62,65,70,84,105,111,129],"BioImage":[63],"Archive,":[64],"Image":[66],"Data":[67],"Resource,":[68],"BioStudies":[71],"databases.":[72],"believe":[74],"this":[76],"can":[78,133],"play":[79],"a":[80],"role":[81],"mitigating":[83],"current":[85],"inequalities":[86],"scientific":[90],"resources":[91],"across":[92],"academia.":[93],"As":[94],"produces":[96],"permanent":[97],"links":[98],"compiled":[100],"environments,":[102],"we":[103],"foresee":[104],"become":[108],"widely-used":[109],"within":[110],"community":[112],"enable":[114],"exploratory":[115],"research.":[116],"built":[119],"deployed":[121],"using":[122],"helmsman":[123],"helm":[125],"released":[127],"under":[128],"MIT":[130],"licence.":[131],"be":[134],"accessed":[135],"at":[136],"binder.bioimagearchive.org":[137],"runs":[139],"any":[141],"standard":[142],"web":[143],"browser.":[144]},"counts_by_year":[],"updated_date":"2026-04-06T07:47:59.780226","created_date":"2024-11-21T00:00:00"}
