{"id":"https://openalex.org/W4412492686","doi":"https://doi.org/10.1093/bioinformatics/btaf407","title":"<tt>AdDeam</tt> : a fast and scalable tool for estimating and clustering reference-level damage profiles","display_name":"<tt>AdDeam</tt> : a fast and scalable tool for estimating and clustering reference-level damage profiles","publication_year":2025,"publication_date":"2025-07-17","ids":{"openalex":"https://openalex.org/W4412492686","doi":"https://doi.org/10.1093/bioinformatics/btaf407","pmid":"https://pubmed.ncbi.nlm.nih.gov/40674584"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf407","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077482080","display_name":"Louis Kraft","orcid":"https://orcid.org/0000-0002-6465-4973"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Louis Kraft","raw_affiliation_strings":["Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Anker Engelunds Vej 1, 2800, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Anker Engelunds Vej 1, 2800, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090964821","display_name":"Thorfinn Sand Korneliussen","orcid":"https://orcid.org/0000-0001-7576-5380"},"institutions":[{"id":"https://openalex.org/I4210127817","display_name":"Lundbeck Foundation","ror":"https://ror.org/03hz8wd80","country_code":"DK","type":"other","lineage":["https://openalex.org/I4210127817"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Thorfinn Sand Korneliussen","raw_affiliation_strings":["Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen , Copenhagen K, 1350,","Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Oester Voldgade 5-7, 1350, Copenhagen K, Denmark"],"affiliations":[{"raw_affiliation_string":"Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen , Copenhagen K, 1350,","institution_ids":["https://openalex.org/I4210127817"]},{"raw_affiliation_string":"Lundbeck Foundation GeoGenetics Centre, Globe Institute, University of Copenhagen, Oester Voldgade 5-7, 1350, Copenhagen K, Denmark","institution_ids":["https://openalex.org/I4210127817"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064396074","display_name":"Peter Wad Sackett","orcid":"https://orcid.org/0000-0003-3628-2807"},"institutions":[{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Peter Wad Sackett","raw_affiliation_strings":["Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Anker Engelunds Vej 1, 2800, Kongens Lyngby, Denmark"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Department of Health Technology, Section for Bioinformatics, Technical University of Denmark, Anker Engelunds Vej 1, 2800, Kongens Lyngby, Denmark","institution_ids":["https://openalex.org/I96673099"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023722162","display_name":"Gabriel Renaud","orcid":"https://orcid.org/0000-0002-0630-027X"},"institutions":[{"id":"https://openalex.org/I43406934","display_name":"Universit\u00e9 Laval","ror":"https://ror.org/04sjchr03","country_code":"CA","type":"education","lineage":["https://openalex.org/I43406934"]},{"id":"https://openalex.org/I96673099","display_name":"Technical University of Denmark","ror":"https://ror.org/04qtj9h94","country_code":"DK","type":"education","lineage":["https://openalex.org/I96673099"]}],"countries":["CA","DK"],"is_corresponding":false,"raw_author_name":"Gabriel Renaud","raw_affiliation_strings":["Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Pavillon Adrien-Pouliot, Avenue de la M\u00e9decine 1065, Qu\u00e9bec City, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Health Technology, Section for Bioinformatics, Technical University of Denmark , Kongens Lyngby, 2800,","institution_ids":["https://openalex.org/I96673099"]},{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Universit\u00e9 Laval, Pavillon Adrien-Pouliot, Avenue de la M\u00e9decine 1065, Qu\u00e9bec City, Canada","institution_ids":["https://openalex.org/I43406934"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077482080"],"corresponding_institution_ids":["https://openalex.org/I96673099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2011907,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12232","display_name":"Yersinia bacterium, plague, ectoparasites research","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11515","display_name":"Bacillus and Francisella bacterial research","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6897829174995422},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6747017502784729},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5536600947380066},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.41265174746513367},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4104093909263611},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1942034363746643},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1531946063041687},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11351045966148376}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6897829174995422},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6747017502784729},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5536600947380066},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.41265174746513367},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4104093909263611},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1942034363746643},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1531946063041687},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11351045966148376}],"mesh":[{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000072441","descriptor_name":"DNA, Ancient","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004249","descriptor_name":"DNA Damage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40674584","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40674584","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/e6c3c5ae-6bd4-4e94-9d17-0e2c4f6a83f7","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/e6c3c5ae-6bd4-4e94-9d17-0e2c4f6a83f7","pdf_url":"https://curis.ku.dk/ws/files/459789642/btaf407.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kraft , L , Korneliussen , T S , Sackett , P W & Renaud , G 2025 , ' AdDeam : a fast and scalable tool for estimating and clustering reference-level damage profiles ' , Bioinformatics , vol. 41 , no. 8 , btaf407 . https://doi.org/10.1093/bioinformatics/btaf407","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12317744","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12317744","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf407","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf407","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322436","display_name":"Novo Nordisk","ror":"https://ror.org/0435rc536"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":55,"referenced_works":["https://openalex.org/W1579501135","https://openalex.org/W1969869762","https://openalex.org/W1981338406","https://openalex.org/W1993435119","https://openalex.org/W1994398618","https://openalex.org/W2013367562","https://openalex.org/W2022327489","https://openalex.org/W2090684975","https://openalex.org/W2092369215","https://openalex.org/W2099595226","https://openalex.org/W2103283541","https://openalex.org/W2112954194","https://openalex.org/W2113679889","https://openalex.org/W2124031503","https://openalex.org/W2150163641","https://openalex.org/W2154930815","https://openalex.org/W2156330112","https://openalex.org/W2343039634","https://openalex.org/W2461293866","https://openalex.org/W2580994751","https://openalex.org/W2609869963","https://openalex.org/W2724746375","https://openalex.org/W2784010265","https://openalex.org/W2930841567","https://openalex.org/W2950216867","https://openalex.org/W2996069160","https://openalex.org/W2997591727","https://openalex.org/W3030961449","https://openalex.org/W3087682297","https://openalex.org/W3129075539","https://openalex.org/W3130861457","https://openalex.org/W3137236105","https://openalex.org/W3154934483","https://openalex.org/W3161461466","https://openalex.org/W3161622382","https://openalex.org/W3175387722","https://openalex.org/W3185729856","https://openalex.org/W4200064833","https://openalex.org/W4239366021","https://openalex.org/W4311546538","https://openalex.org/W4312040226","https://openalex.org/W4317906710","https://openalex.org/W4368347272","https://openalex.org/W4380268622","https://openalex.org/W4386475104","https://openalex.org/W4387876540","https://openalex.org/W4389453417","https://openalex.org/W4390694263","https://openalex.org/W4391145607","https://openalex.org/W4402439783","https://openalex.org/W4402632864","https://openalex.org/W4403964875","https://openalex.org/W4404285528","https://openalex.org/W6634644647","https://openalex.org/W6675354045"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2389214306"],"abstract_inverted_index":{"AdDeam":[0],"is":[1,14],"publicly":[2],"available":[3,26],"at":[4,27],"https://github.com/LouisPwr/AdDeam":[5],"and":[6,18,23,29],"can":[7],"also":[8],"be":[9],"installed":[10],"via":[11],"Bioconda.":[12],"It":[13],"implemented":[15],"in":[16],"Python":[17],"C++.":[19],"All":[20],"analysis":[21],"scripts":[22],"datasets":[24],"are":[25],"https://github.com/LouisPwr/AdDeamAnalysis":[28],"on":[30],"Zenodo":[31],"under:":[32],"10.5281/zenodo.15052427.":[33]},"counts_by_year":[],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-07-19T00:00:00"}