{"id":"https://openalex.org/W4411977151","doi":"https://doi.org/10.1093/bioinformatics/btaf386","title":"CCRR: a user-friendly platform for analyzing complex chromosomal rearrangements in tumors","display_name":"CCRR: a user-friendly platform for analyzing complex chromosomal rearrangements in tumors","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4411977151","doi":"https://doi.org/10.1093/bioinformatics/btaf386","pmid":"https://pubmed.ncbi.nlm.nih.gov/40607625"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf386","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf386","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf386/63653700/btaf386.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf386/63653700/btaf386.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103103648","display_name":"Jinjiang Liu","orcid":"https://orcid.org/0009-0004-7292-009X"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinjiang Liu","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100366650","display_name":"Kun Wang","orcid":"https://orcid.org/0000-0002-2793-7923"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Wang","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110960342","display_name":"Yawen Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yawen Yuan","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102577949","display_name":"Guangchao Bao","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangchao Bao","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111260920","display_name":"Hang Ci","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hang Ci","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mingqin Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingqin Liu","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yunpan Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunpan Lyu","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jingxin Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingxin Tang","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009644404","display_name":"Jian Yang","orcid":"https://orcid.org/0000-0002-4408-1952"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian Yang","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090189228","display_name":"Haoyang Cai","orcid":"https://orcid.org/0000-0001-8552-8565"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haoyang Cai","raw_affiliation_strings":["Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,"],"raw_orcid":"https://orcid.org/0000-0001-8552-8565","affiliations":[{"raw_affiliation_string":"Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, Sichuan University , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Sichuan University Center of Growth, Metabolism, and Aging, Key Laboratory of Bio-Resources and Eco-Environment, College of Life Sciences, , Chengdu, Sichuan 610064,","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5009644404","https://openalex.org/A5090189228"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.14095165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.6851999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.6851999759674072,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.09149999916553497,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.033900000154972076,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/executable","display_name":"Executable","score":0.8016242980957031},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7521424293518066},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.5965490341186523},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5594832301139832},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.41345101594924927},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37946799397468567},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3235571086406708},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.29492026567459106}],"concepts":[{"id":"https://openalex.org/C160145156","wikidata":"https://www.wikidata.org/wiki/Q778586","display_name":"Executable","level":2,"score":0.8016242980957031},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7521424293518066},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.5965490341186523},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5594832301139832},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.41345101594924927},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37946799397468567},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3235571086406708},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.29492026567459106}],"mesh":[{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002869","descriptor_name":"Chromosome Aberrations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf386","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf386","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf386/63653700/btaf386.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12258142","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12258142","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmid:40607625","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40607625","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf386","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf386","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf386/63653700/btaf386.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2317433588","display_name":null,"funder_award_id":"32170648","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411977151.pdf","grobid_xml":"https://content.openalex.org/works/W4411977151.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W2111350087","https://openalex.org/W2139266962","https://openalex.org/W2146005104","https://openalex.org/W2155943701","https://openalex.org/W2171892226","https://openalex.org/W2235737683","https://openalex.org/W2311924792","https://openalex.org/W2394615385","https://openalex.org/W2912484801","https://openalex.org/W2921778637","https://openalex.org/W2948024819","https://openalex.org/W2950833487","https://openalex.org/W2981548686","https://openalex.org/W3005469082","https://openalex.org/W3006500278","https://openalex.org/W3091245808","https://openalex.org/W3142571537","https://openalex.org/W3160770927","https://openalex.org/W3211999933","https://openalex.org/W3212807134","https://openalex.org/W4200028151","https://openalex.org/W4225740064","https://openalex.org/W4285386912","https://openalex.org/W4311363347","https://openalex.org/W4386160411","https://openalex.org/W4391322178","https://openalex.org/W4396790169","https://openalex.org/W6697144307"],"related_works":["https://openalex.org/W82161441","https://openalex.org/W1576042299","https://openalex.org/W2181943964","https://openalex.org/W1528423264","https://openalex.org/W2598672065","https://openalex.org/W1993817217","https://openalex.org/W3120610872","https://openalex.org/W1638297612","https://openalex.org/W2523911541","https://openalex.org/W2169715360"],"abstract_inverted_index":{"SUMMARY:":[0],"Complex":[1,44],"chromosomal":[2,103],"rearrangements":[3,58,104],"in":[4,59,105],"tumors":[5,106],"involve":[6],"intricate":[7],"genomic":[8],"alterations":[9],"that":[10],"significantly":[11],"affect":[12],"gene":[13],"function":[14],"and":[15,36,52,65,76,86,94,120,136],"contribute":[16],"to":[17,33,99],"cancer":[18,26],"development.":[19],"Identifying":[20],"these":[21],"events":[22],"is":[23,29,129,146],"crucial":[24],"for":[25,55,117],"research":[27],"but":[28],"often":[30],"challenging":[31],"due":[32],"the":[34,43,84],"complexity":[35],"limitations":[37],"of":[38,88],"existing":[39],"tools.":[40],"We":[41],"developed":[42],"Chromosomal":[45],"Rearrangements":[46],"Resolver":[47],"(CCRR),":[48],"a":[49,70,114],"comprehensive,":[50],"reproducible,":[51],"user-friendly":[53],"platform":[54,128],"analyzing":[56],"complex":[57,102],"tumors.":[60],"CCRR":[61,111,127],"integrates":[62],"multiple":[63],"SV":[64,93],"CNV":[66,95],"detection":[67],"tools":[68],"within":[69],"Docker":[71],"container":[72],"environment,":[73],"simplifying":[74],"installation":[75],"configuration.":[77],"It":[78],"can":[79,138],"be":[80,139],"easily":[81],"deployed,":[82],"automating":[83],"execution":[85],"merging":[87],"results,":[89],"providing":[90],"high-confidence":[91],"consensus":[92],"calls,":[96],"allowing":[97],"researchers":[98],"efficiently":[100],"analyze":[101],"without":[107],"extensive":[108],"bioinformatics":[109],"expertise.":[110],"also":[112],"includes":[113],"web":[115],"server":[116],"one-click":[118],"analysis":[119],"customized":[121],"visualization.":[122],"AVAILABILITY":[123],"AND":[124],"IMPLEMENTATION:":[125],"The":[126],"freely":[130],"available":[131,147],"at":[132,141,148],"https://www.ccrr.life.":[133],"Source":[134],"code":[135],"executables":[137],"accessed":[140],"https://github.com/laslk/CCRR.":[142],"An":[143],"archived":[144],"version":[145],"Zenodo:":[149],"https://doi.org/10.5281/zenodo.15386513.":[150]},"counts_by_year":[],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
