{"id":"https://openalex.org/W4411750182","doi":"https://doi.org/10.1093/bioinformatics/btaf383","title":"KGG: a fully automated workflow for creating disease-specific knowledge graphs","display_name":"KGG: a fully automated workflow for creating disease-specific knowledge graphs","publication_year":2025,"publication_date":"2025-06-28","ids":{"openalex":"https://openalex.org/W4411750182","doi":"https://doi.org/10.1093/bioinformatics/btaf383","pmid":"https://pubmed.ncbi.nlm.nih.gov/40580451"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf383","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf383/63616046/btaf383.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf383/63616046/btaf383.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007731858","display_name":"Reagon Karki","orcid":"https://orcid.org/0000-0002-1815-0037"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]},{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Reagon Karki","raw_affiliation_strings":["Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004719764","display_name":"Yojana Gadiya","orcid":"https://orcid.org/0000-0002-7683-0452"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]},{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yojana Gadiya","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","institution_ids":["https://openalex.org/I164928964"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028120868","display_name":"Andrea Zaliani","orcid":"https://orcid.org/0000-0002-1740-8390"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]},{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrea Zaliani","raw_affiliation_strings":["Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","institution_ids":["https://openalex.org/I164928964"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112218998","display_name":"B.K. Pokharel","orcid":null},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]},{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I70451448","display_name":"HAW Hamburg","ror":"https://ror.org/00fkqwx76","country_code":"DE","type":"education","lineage":["https://openalex.org/I70451448"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bishab Pokharel","raw_affiliation_strings":["Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","University of Hamburg, Department of Informatics , Hamburg, 22527,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","University of Hamburg , Vogt-Koelln-Str. 30, Hamburg, 22527,"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"University of Hamburg, Department of Informatics , Hamburg, 22527,","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I70451448"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","institution_ids":["https://openalex.org/I164928964"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"University of Hamburg , Vogt-Koelln-Str. 30, Hamburg, 22527,","institution_ids":["https://openalex.org/I159176309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087905434","display_name":"Negin Sadat Babaiha","orcid":"https://orcid.org/0009-0002-7821-372X"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Negin Sadat Babaiha","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Sankt Augustin, 53757,","Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) Department of Bioinformatics, , Schloss Birlinghoven, 53757 Sankt Augustin,"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Sankt Augustin, 53757,","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) Department of Bioinformatics, , Schloss Birlinghoven, 53757 Sankt Augustin,","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022319056","display_name":"Marek Ostaszewski","orcid":"https://orcid.org/0000-0003-1473-370X"},"institutions":[{"id":"https://openalex.org/I186903577","display_name":"University of Luxembourg","ror":"https://ror.org/036x5ad56","country_code":"LU","type":"education","lineage":["https://openalex.org/I186903577"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Marek Ostaszewski","raw_affiliation_strings":["Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg , Belvaux, L-4367,","University of Luxembourg , , 6, avenue du Swing, L-4367 Belvaux,","Luxembourg Centre for Systems Biomedicine (LCSB) , , 6, avenue du Swing, L-4367 Belvaux,"],"affiliations":[{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine (LCSB), University of Luxembourg , Belvaux, L-4367,","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"University of Luxembourg , , 6, avenue du Swing, L-4367 Belvaux,","institution_ids":["https://openalex.org/I186903577"]},{"raw_affiliation_string":"Luxembourg Centre for Systems Biomedicine (LCSB) , , 6, avenue du Swing, L-4367 Belvaux,","institution_ids":["https://openalex.org/I186903577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003139478","display_name":"Martin Hofmann\u2010Apitius","orcid":"https://orcid.org/0000-0001-9012-6720"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]},{"id":"https://openalex.org/I4210164149","display_name":"Bonn Aachen International Center for Information Technology","ror":"https://ror.org/054zhq066","country_code":"DE","type":"facility","lineage":["https://openalex.org/I135140700","https://openalex.org/I155417937","https://openalex.org/I4210164149","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Hofmann-Apitius","raw_affiliation_strings":["Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Sankt Augustin, 53757,","Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,","Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) Department of Bioinformatics, , Schloss Birlinghoven, 53757 Sankt Augustin,"],"affiliations":[{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , Bonn, 53113,","institution_ids":["https://openalex.org/I4210164149"]},{"raw_affiliation_string":"Department of Bioinformatics, Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) , Sankt Augustin, 53757,","institution_ids":["https://openalex.org/I4210098248"]},{"raw_affiliation_string":"Bonn-Aachen International Center for Information Technology (B-IT), University of Bonn , 53113 Bonn,","institution_ids":["https://openalex.org/I4210164149","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing (SCAI) Department of Bioinformatics, , Schloss Birlinghoven, 53757 Sankt Augustin,","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052911277","display_name":"Philip Gribbon","orcid":"https://orcid.org/0000-0001-7655-2459"},"institutions":[{"id":"https://openalex.org/I164928964","display_name":"Merck (Germany)","ror":"https://ror.org/04b2dty93","country_code":"DE","type":"company","lineage":["https://openalex.org/I164928964"]},{"id":"https://openalex.org/I4210107844","display_name":"Fraunhofer Institute for Translational Medicine and Pharmacology","ror":"https://ror.org/01s1h3j07","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210107844","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philip Gribbon","raw_affiliation_strings":["Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,"],"affiliations":[{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Frankfurt, 60590,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Hamburg, 22525,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Institute for Translational Medicine and Pharmacology (ITMP) , Schnackenburgallee 114, 22525 Hamburg,","institution_ids":["https://openalex.org/I4210107844"]},{"raw_affiliation_string":"Fraunhofer Cluster of Excellence for Immune-Mediated Diseases (CIMD) , Theodor Stern Kai 7, 60590 Frankfurt,","institution_ids":["https://openalex.org/I164928964"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5007731858"],"corresponding_institution_ids":["https://openalex.org/I164928964","https://openalex.org/I4210107844"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7625,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72539236,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7880942821502686},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7395225167274475},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.6415899395942688},{"id":"https://openalex.org/keywords/generator","display_name":"Generator (circuit theory)","score":0.6191533207893372},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5007004737854004},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.332069456577301},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3033531606197357},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2937031388282776},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.23100546002388}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7880942821502686},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7395225167274475},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.6415899395942688},{"id":"https://openalex.org/C2780992000","wikidata":"https://www.wikidata.org/wiki/Q17016113","display_name":"Generator (circuit theory)","level":3,"score":0.6191533207893372},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5007004737854004},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.332069456577301},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3033531606197357},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2937031388282776},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.23100546002388},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf383","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf383/63616046/btaf383.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40580451","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40580451","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/500195","is_oa":true,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/500195","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12270262","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12270262","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf383","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf383/63616046/btaf383.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G4137814424","display_name":null,"funder_award_id":"101046203","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"},{"id":"https://openalex.org/G8623809638","display_name":null,"funder_award_id":"101017536","funder_id":"https://openalex.org/F4320334322","funder_display_name":"HORIZON EUROPE Framework Programme"}],"funders":[{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411750182.pdf","grobid_xml":"https://content.openalex.org/works/W4411750182.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1563940013","https://openalex.org/W1969709265","https://openalex.org/W2019922908","https://openalex.org/W2023250031","https://openalex.org/W2030531674","https://openalex.org/W2060871034","https://openalex.org/W2092168208","https://openalex.org/W2118812689","https://openalex.org/W2122732537","https://openalex.org/W2134927362","https://openalex.org/W2150908245","https://openalex.org/W2166657289","https://openalex.org/W2223119478","https://openalex.org/W2523314419","https://openalex.org/W2559588208","https://openalex.org/W2605218377","https://openalex.org/W2625343706","https://openalex.org/W2656695974","https://openalex.org/W2747680751","https://openalex.org/W2766482558","https://openalex.org/W2769065924","https://openalex.org/W2886458688","https://openalex.org/W2911489562","https://openalex.org/W2949311246","https://openalex.org/W2995738274","https://openalex.org/W3038955026","https://openalex.org/W3044641639","https://openalex.org/W3088646411","https://openalex.org/W3106143834","https://openalex.org/W3174259453","https://openalex.org/W3215349798","https://openalex.org/W4200481829","https://openalex.org/W4210327135","https://openalex.org/W4308616307","https://openalex.org/W4308634507","https://openalex.org/W4309506674","https://openalex.org/W4309908854","https://openalex.org/W4319726992","https://openalex.org/W4362588157","https://openalex.org/W4372333627","https://openalex.org/W4380610567","https://openalex.org/W4380853828","https://openalex.org/W4380986985","https://openalex.org/W4386817494","https://openalex.org/W4387820738","https://openalex.org/W4388455891","https://openalex.org/W4388539829","https://openalex.org/W4391429249","https://openalex.org/W4392654282","https://openalex.org/W4395026179","https://openalex.org/W4402078386","https://openalex.org/W6633589378","https://openalex.org/W6853337536","https://openalex.org/W6853608485","https://openalex.org/W6861111132","https://openalex.org/W6862353035"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W2397952901","https://openalex.org/W2029380707","https://openalex.org/W188202134","https://openalex.org/W4255934811","https://openalex.org/W2465382974","https://openalex.org/W2010229520"],"abstract_inverted_index":{"The":[0],"resources":[1],"and":[2],"codes":[3],"for":[4],"KGG":[5],"are":[6],"publicly":[7],"available":[8],"at:":[9],"https://github.com/Fraunhofer-ITMP/kgg.":[10]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-06-28T00:00:00"}
