{"id":"https://openalex.org/W4411754978","doi":"https://doi.org/10.1093/bioinformatics/btaf364","title":"dbscATAC: a resource of single-cell super-enhancers/enhancers and gene markers derived from scATAC-seq data","display_name":"dbscATAC: a resource of single-cell super-enhancers/enhancers and gene markers derived from scATAC-seq data","publication_year":2025,"publication_date":"2025-06-23","ids":{"openalex":"https://openalex.org/W4411754978","doi":"https://doi.org/10.1093/bioinformatics/btaf364","pmid":"https://pubmed.ncbi.nlm.nih.gov/40581357"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf364","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf364/63550729/btaf364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf364/63550729/btaf364.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037648785","display_name":"Yingmei Li","orcid":"https://orcid.org/0000-0002-2333-595X"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yingmei Li","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Department of Pharmacy, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Department of Pharmacy, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Department of Pharmacy, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Department of Pharmacy, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059367746","display_name":"Shahid Ullah","orcid":"https://orcid.org/0000-0001-6694-5590"},"institutions":[{"id":"https://openalex.org/I2802999120","display_name":"Government of Khyber Pakhtunkhwa","ror":"https://ror.org/04zyfmb02","country_code":"PK","type":"government","lineage":["https://openalex.org/I2802999120"]}],"countries":["PK"],"is_corresponding":false,"raw_author_name":"Shahid Ullah","raw_affiliation_strings":["S-Khan Lab , Mardan, Khyber Pakhtunkhwa, Takhtbhai, KP 23200,","S-Khan Lab Mardan ,"],"affiliations":[{"raw_affiliation_string":"S-Khan Lab , Mardan, Khyber Pakhtunkhwa, Takhtbhai, KP 23200,","institution_ids":["https://openalex.org/I2802999120"]},{"raw_affiliation_string":"S-Khan Lab Mardan ,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101852876","display_name":"Yanping Xian","orcid":"https://orcid.org/0000-0002-4126-1771"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yumei Xian","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063862193","display_name":"Yazhou Sun","orcid":"https://orcid.org/0000-0003-4401-1011"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yazhou Sun","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100523754","display_name":"Zilong Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zilong Zheng","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102820307","display_name":"Xiaoy\u00fc Ma","orcid":"https://orcid.org/0000-0003-2177-4083"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyu Ma","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020955864","display_name":"Ming Shi","orcid":"https://orcid.org/0000-0001-9263-6468"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Shi","raw_affiliation_strings":["Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R"],"affiliations":[{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102986244","display_name":"Changlin Zhang","orcid":"https://orcid.org/0000-0001-7242-7378"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Changlin Zhang","raw_affiliation_strings":["Department of Gynecology, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Department of Gynecology, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Department of Gynecology, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Department of Gynecology, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108047379","display_name":"Tian Li","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tian Li","raw_affiliation_strings":["Department of Gynecology, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Department of Gynecology, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Department of Gynecology, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Department of Gynecology, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091104746","display_name":"Leli Zeng","orcid":"https://orcid.org/0000-0002-3378-5241"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Leli Zeng","raw_affiliation_strings":["Digestive Diseases Center, Scientific Research Center, The Biobank, The Seventh Affiliated Hospital of Sun Yat-Sen University , Shenzhen 518107,","Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","The Biobank, The Seventh Affiliated Hospital of Sun Yat-Sen University Digestive Diseases Center, Scientific Research Center, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Digestive Diseases Center, Scientific Research Center, The Biobank, The Seventh Affiliated Hospital of Sun Yat-Sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Biobank, The Seventh Affiliated Hospital of Sun Yat-Sen University Digestive Diseases Center, Scientific Research Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101634160","display_name":"Jie Chen","orcid":"https://orcid.org/0000-0002-6282-7244"},"institutions":[{"id":"https://openalex.org/I4210092101","display_name":"Shanghai Children's Medical Center","ror":"https://ror.org/00cd9s024","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210092101"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Chen","raw_affiliation_strings":["Department of General Surgery, Shanghai Children\u2019s Medical Center, Shanghai Jiao Tong School of Medicine , Shanghai 200127,","Shanghai Jiao Tong School of Medicine Department of General Surgery, Shanghai Children\u2019s Medical Center, , Shanghai, 200127,"],"affiliations":[{"raw_affiliation_string":"Department of General Surgery, Shanghai Children\u2019s Medical Center, Shanghai Jiao Tong School of Medicine , Shanghai 200127,","institution_ids":["https://openalex.org/I4210092101"]},{"raw_affiliation_string":"Shanghai Jiao Tong School of Medicine Department of General Surgery, Shanghai Children\u2019s Medical Center, , Shanghai, 200127,","institution_ids":["https://openalex.org/I4210092101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112506304","display_name":"Ye Deng","orcid":"https://orcid.org/0009-0008-0450-3971"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yubin Y B Deng","raw_affiliation_strings":["Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R"],"affiliations":[{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012847167","display_name":"Fuxin Wei","orcid":"https://orcid.org/0000-0002-7545-6876"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fuxin Wei","raw_affiliation_strings":["Department of Orthopedic Surgery, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Department of Orthopedic Surgery, , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Department of Orthopedic Surgery, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research , Shenzhen, 518107,","institution_ids":[]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Department of Orthopedic Surgery, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024755000","display_name":"Tianshun Gao","orcid":"https://orcid.org/0000-0002-0466-9081"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I4210096354","display_name":"The Seventh Affiliated Hospital of Sun Yat-sen University","ror":"https://ror.org/00rfd5b88","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210096354"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianshun Gao","raw_affiliation_strings":["Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research , Shenzhen, 518107,"],"affiliations":[{"raw_affiliation_string":"Big Data Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Scientific Research Center, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research, The Seventh Affiliated Hospital of Sun Yat-sen University , Shenzhen 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Big Data Center, , Shenzhen, 518107,","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"The Seventh Affiliated Hospital of Sun Yat-sen University Scientific Research Center, , Shenzhen, 518107, P.R","institution_ids":["https://openalex.org/I4210096354","https://openalex.org/I157773358"]},{"raw_affiliation_string":"Shenzhen Key Laboratory of Bone Tissue Repair and Translational Research , Shenzhen, 518107,","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5037648785"],"corresponding_institution_ids":["https://openalex.org/I157773358","https://openalex.org/I4210096354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13826769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.939660906791687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5914191007614136},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5663886070251465},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5083231329917908},{"id":"https://openalex.org/keywords/enhancer-rnas","display_name":"Enhancer RNAs","score":0.465934693813324},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3605791926383972},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28653252124786377}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.939660906791687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5914191007614136},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5663886070251465},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5083231329917908},{"id":"https://openalex.org/C21784809","wikidata":"https://www.wikidata.org/wiki/Q17119097","display_name":"Enhancer RNAs","level":5,"score":0.465934693813324},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3605791926383972},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28653252124786377}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf364","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf364/63550729/btaf364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40581357","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40581357","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12237509","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12237509","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf364","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf364","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf364/63550729/btaf364.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2981938667","display_name":null,"funder_award_id":"Shenzhen","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411754978.pdf","grobid_xml":"https://content.openalex.org/works/W4411754978.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W1971578941","https://openalex.org/W1981030303","https://openalex.org/W2004966039","https://openalex.org/W2033201031","https://openalex.org/W2060484997","https://openalex.org/W2102619694","https://openalex.org/W2151754128","https://openalex.org/W2157810029","https://openalex.org/W2171808845","https://openalex.org/W2176574121","https://openalex.org/W2178688380","https://openalex.org/W2514270659","https://openalex.org/W2736547131","https://openalex.org/W2765331947","https://openalex.org/W2809057270","https://openalex.org/W2887694579","https://openalex.org/W2887910040","https://openalex.org/W2889236955","https://openalex.org/W2898942820","https://openalex.org/W2901303766","https://openalex.org/W2915909179","https://openalex.org/W2915985519","https://openalex.org/W2921841818","https://openalex.org/W2934716754","https://openalex.org/W2960524728","https://openalex.org/W2965985232","https://openalex.org/W3005886292","https://openalex.org/W3008816049","https://openalex.org/W3099179344","https://openalex.org/W3112137768","https://openalex.org/W3126836997","https://openalex.org/W3130608237","https://openalex.org/W3131055609","https://openalex.org/W3131634425","https://openalex.org/W3133082627","https://openalex.org/W3136200267","https://openalex.org/W3185265774","https://openalex.org/W3210860076","https://openalex.org/W3212477617","https://openalex.org/W3214158901","https://openalex.org/W4210347168","https://openalex.org/W4307845770","https://openalex.org/W4312093632","https://openalex.org/W4317241429","https://openalex.org/W4360804057","https://openalex.org/W4378212544","https://openalex.org/W4389304909","https://openalex.org/W4389613138","https://openalex.org/W4389729890","https://openalex.org/W4393043593","https://openalex.org/W4401650885","https://openalex.org/W6769944288","https://openalex.org/W6770120275","https://openalex.org/W6770304583"],"related_works":["https://openalex.org/W2113330652","https://openalex.org/W3098554796","https://openalex.org/W2567553314","https://openalex.org/W3069949010","https://openalex.org/W2146648243","https://openalex.org/W2010420636","https://openalex.org/W4236711043","https://openalex.org/W2980673092","https://openalex.org/W3014787543","https://openalex.org/W2401460808"],"abstract_inverted_index":{"The":[0,30],"database":[1],"with":[2],"all":[3],"the":[4,13],"super-enhancer/enhancer":[5],"annotation":[6],"data":[7,37],"is":[8],"available":[9,27],"at":[10,28,42],"http://singlecelldb.com/dbscATAC/index.php.":[11],"And":[12],"source":[14,31],"code":[15],"of":[16,20],"dbscATAC":[17],"for":[18],"prediction":[19],"SEs,":[21],"enhancers,":[22],"and":[23,36],"gene":[24],"markers":[25],"are":[26],"https://github.com/EvansGao/dbscATAC.":[29],"code,":[32],"tissue/cell":[33],"type":[34],"description,":[35],"summary":[38],"can":[39],"be":[40],"downloaded":[41],"DOI:":[43],"10.6084/m9.figshare.28706414.scATAC-seq,":[44],"Database,":[45],"Super-enhancers/enhancers,":[46],"Gene":[47],"markers.":[48]},"counts_by_year":[],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
