{"id":"https://openalex.org/W4411723036","doi":"https://doi.org/10.1093/bioinformatics/btaf361","title":"New heuristics for phylogeny estimation under the balanced minimum evolution criterion","display_name":"New heuristics for phylogeny estimation under the balanced minimum evolution criterion","publication_year":2025,"publication_date":"2025-06-19","ids":{"openalex":"https://openalex.org/W4411723036","doi":"https://doi.org/10.1093/bioinformatics/btaf361","pmid":"https://pubmed.ncbi.nlm.nih.gov/40577811"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf361","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf361/63528024/btaf361.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf361/63528024/btaf361.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028337021","display_name":"Daniele Catanzaro","orcid":"https://orcid.org/0000-0001-9427-1562"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Daniele Catanzaro","raw_affiliation_strings":["Center for Operations Research and Econometrics, Universit\u00e9 Catholique de Louvain , 1348 Louvain-la-Neuve,","Universit\u00e9 Catholique de Louvain Center for Operations Research and Econometrics, , Louvain-la-Neuve, 1348,"],"affiliations":[{"raw_affiliation_string":"Center for Operations Research and Econometrics, Universit\u00e9 Catholique de Louvain , 1348 Louvain-la-Neuve,","institution_ids":["https://openalex.org/I95674353"]},{"raw_affiliation_string":"Universit\u00e9 Catholique de Louvain Center for Operations Research and Econometrics, , Louvain-la-Neuve, 1348,","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093015757","display_name":"Henri Dehaybe","orcid":"https://orcid.org/0000-0002-1276-9859"},"institutions":[{"id":"https://openalex.org/I95674353","display_name":"UCLouvain","ror":"https://ror.org/02495e989","country_code":"BE","type":"education","lineage":["https://openalex.org/I95674353"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Henri Dehaybe","raw_affiliation_strings":["Center for Operations Research and Econometrics, Universit\u00e9 Catholique de Louvain , 1348 Louvain-la-Neuve,","Universit\u00e9 Catholique de Louvain Center for Operations Research and Econometrics, , Louvain-la-Neuve, 1348,"],"affiliations":[{"raw_affiliation_string":"Center for Operations Research and Econometrics, Universit\u00e9 Catholique de Louvain , 1348 Louvain-la-Neuve,","institution_ids":["https://openalex.org/I95674353"]},{"raw_affiliation_string":"Universit\u00e9 Catholique de Louvain Center for Operations Research and Econometrics, , Louvain-la-Neuve, 1348,","institution_ids":["https://openalex.org/I95674353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066238119","display_name":"Raffaele Pesenti","orcid":"https://orcid.org/0000-0001-5890-4238"},"institutions":[{"id":"https://openalex.org/I149461666","display_name":"Ca' Foscari University of Venice","ror":"https://ror.org/04yzxz566","country_code":"IT","type":"education","lineage":["https://openalex.org/I149461666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaele Pesenti","raw_affiliation_strings":["Department of Management, Universit\u00e0 Ca\u2019 Foscari , I-30121 Venezia,","Universit\u00e0 Ca\u2019 Foscari, San Giobbe Department of Management, , Venezia, I-30121,"],"affiliations":[{"raw_affiliation_string":"Department of Management, Universit\u00e0 Ca\u2019 Foscari , I-30121 Venezia,","institution_ids":["https://openalex.org/I149461666"]},{"raw_affiliation_string":"Universit\u00e0 Ca\u2019 Foscari, San Giobbe Department of Management, , Venezia, I-30121,","institution_ids":["https://openalex.org/I149461666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028337021"],"corresponding_institution_ids":["https://openalex.org/I95674353"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7625,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72508447,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":98},"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.8756778240203857},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.660783588886261},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5359042286872864},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5107173919677734},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.5008537769317627},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3422412872314453},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.30512458086013794},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22167286276817322},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09715983271598816},{"id":"https://openalex.org/keywords/economics","display_name":"Economics","score":0.07212886214256287}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.8756778240203857},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.660783588886261},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5359042286872864},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5107173919677734},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.5008537769317627},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3422412872314453},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.30512458086013794},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22167286276817322},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09715983271598816},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.07212886214256287},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000066506","descriptor_name":"Heuristics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaf361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf361","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf361/63528024/btaf361.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40577811","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40577811","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:dial.uclouvain.be:boreal:304894","is_oa":true,"landing_page_url":"http://hdl.handle.net/2078.1/304894","pdf_url":null,"source":{"id":"https://openalex.org/S4306400166","display_name":"Digital Access to Libraries","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800384882","host_organization_name":"Harris County Public Library","host_organization_lineage":["https://openalex.org/I2800384882"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics (Oxford, England), Vol. 41, no.7 (2025)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:11060843","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12255881","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unive.it:10278/5097547","is_oa":false,"landing_page_url":"https://hdl.handle.net/10278/5097547","pdf_url":null,"source":{"id":"https://openalex.org/S4306402336","display_name":"ARCA (Universit\u00e0 Ca' Foscari Venezia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149461666","host_organization_name":"Ca' Foscari University of Venice","host_organization_lineage":["https://openalex.org/I149461666"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf361","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf361","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf361/63528024/btaf361.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4959524261","display_name":null,"funder_award_id":"COALESCENS","funder_id":"https://openalex.org/F4320309714","funder_display_name":"Fondation Louvain"},{"id":"https://openalex.org/G8180812803","display_name":null,"funder_award_id":"FNRS PDR 40007831","funder_id":"https://openalex.org/F4320321390","funder_display_name":"Fonds De La Recherche Scientifique - FNRS"}],"funders":[{"id":"https://openalex.org/F4320309714","display_name":"Fondation Louvain","ror":"https://ror.org/02495e989"},{"id":"https://openalex.org/F4320321390","display_name":"Fonds De La Recherche Scientifique - FNRS","ror":"https://ror.org/03q83t159"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411723036.pdf","grobid_xml":"https://content.openalex.org/works/W4411723036.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W240043582","https://openalex.org/W1586629546","https://openalex.org/W1973912434","https://openalex.org/W2003447360","https://openalex.org/W2012444040","https://openalex.org/W2029423003","https://openalex.org/W2040026476","https://openalex.org/W2041335626","https://openalex.org/W2082445660","https://openalex.org/W2095994482","https://openalex.org/W2097706568","https://openalex.org/W2103849916","https://openalex.org/W2111211467","https://openalex.org/W2114508120","https://openalex.org/W2152580193","https://openalex.org/W2161973008","https://openalex.org/W2482862398","https://openalex.org/W2594416172","https://openalex.org/W2939491123","https://openalex.org/W3007262143","https://openalex.org/W3019474735","https://openalex.org/W3119842321","https://openalex.org/W3194392780","https://openalex.org/W4233815609","https://openalex.org/W4387966948","https://openalex.org/W4409781631","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W4252555497","https://openalex.org/W3121175838","https://openalex.org/W3016293053","https://openalex.org/W1690653314","https://openalex.org/W2275524962","https://openalex.org/W2401723157","https://openalex.org/W2065055572","https://openalex.org/W2784269775"],"abstract_inverted_index":{"Codes":[0],"and":[1,7],"data":[2],"are":[3],"available":[4],"at":[5,9],"https://github.com/HenriDeh/BME_BeamSearch.git":[6],"archived":[8],"https://zenodo.org/records/15631441":[10],"(DOI:":[11],"10.5281/zenodo.15631440).":[12]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
