{"id":"https://openalex.org/W4411674718","doi":"https://doi.org/10.1093/bioinformatics/btaf339","title":"SpyDen: simplifying molecular and structural analysis across spines and dendrites","display_name":"SpyDen: simplifying molecular and structural analysis across spines and dendrites","publication_year":2025,"publication_date":"2025-06-16","ids":{"openalex":"https://openalex.org/W4411674718","doi":"https://doi.org/10.1093/bioinformatics/btaf339","pmid":"https://pubmed.ncbi.nlm.nih.gov/40569855"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf339","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf339","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf339/63501254/btaf339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf339/63501254/btaf339.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033639113","display_name":"Maximilian F. Eggl","orcid":"https://orcid.org/0000-0001-5815-1045"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]},{"id":"https://openalex.org/I4210087099","display_name":"Instituto de Neurociencias","ror":"https://ror.org/000nhpy59","country_code":"ES","type":"facility","lineage":["https://openalex.org/I111262870","https://openalex.org/I134820265","https://openalex.org/I4210087099"]}],"countries":["DE","ES"],"is_corresponding":true,"raw_author_name":"Maximilian F Eggl","raw_affiliation_strings":["Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","Institute of Neuroscience, CSIC-UMH , Alicante 03550,","Institute of Neuroscience, CSIC-UMH, Alicante 03550, Spain","Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Institute of Neuroscience, CSIC-UMH , Alicante 03550,","institution_ids":["https://openalex.org/I4210087099"]},{"raw_affiliation_string":"Institute of Neuroscience, CSIC-UMH, Alicante 03550, Spain","institution_ids":["https://openalex.org/I4210087099"]},{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056982679","display_name":"Surbhit Wagle","orcid":"https://orcid.org/0000-0002-3825-6875"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Surbhit Wagle","raw_affiliation_strings":["Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5099062992","display_name":"Jean P. Filling","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210115279","display_name":"Department of Physiological Sciences","ror":"https://ror.org/0218eta95","country_code":"RU","type":"government","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210115279"]}],"countries":["DE","RU"],"is_corresponding":false,"raw_author_name":"Jean P Filling","raw_affiliation_strings":["Institute of Physiological Chemistry, University of Mainz Medical Centre , Mainz 55128,","Institute of Physiological Chemistry, University of Mainz Medical Centre, Mainz 55128, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Physiological Chemistry, University of Mainz Medical Centre , Mainz 55128,","institution_ids":["https://openalex.org/I4210115279","https://openalex.org/I4210094062","https://openalex.org/I197323543"]},{"raw_affiliation_string":"Institute of Physiological Chemistry, University of Mainz Medical Centre, Mainz 55128, Germany","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085658627","display_name":"Thomas E. Chater","orcid":"https://orcid.org/0000-0001-6133-0001"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Thomas E Chater","raw_affiliation_strings":["Department of Physiology, Keio University School of Medicine , Shinjuku-ku, Tokyo 160-8582,","Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science , Wako-Shi, Saitama 351-0198,","Department of Physiology, Keio University School of Medicine, Shinjuku-ku, Tokyo 160-8582, Japan","Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science, Wako-Shi, Saitama 351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"Department of Physiology, Keio University School of Medicine , Shinjuku-ku, Tokyo 160-8582,","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science , Wako-Shi, Saitama 351-0198,","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"Department of Physiology, Keio University School of Medicine, Shinjuku-ku, Tokyo 160-8582, Japan","institution_ids":["https://openalex.org/I203951103"]},{"raw_affiliation_string":"Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science, Wako-Shi, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073132799","display_name":"Yukiko Goda","orcid":"https://orcid.org/0000-0003-0352-9498"},"institutions":[{"id":"https://openalex.org/I142637625","display_name":"Okinawa Institute of Science and Technology Graduate University","ror":"https://ror.org/02qg15b79","country_code":"JP","type":"education","lineage":["https://openalex.org/I142637625"]},{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yukiko Goda","raw_affiliation_strings":["Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science , Wako-Shi, Saitama 351-0198,","Synapse Biology Unit, Okinawa Institute of Science and Technology Graduate University , Kunigami-gun, Okinawa 904-0495,","Synapse Biology Unit, Okinawa Institute of Science and Technology Graduate University, Kunigami-gun, Okinawa 904-0495, Japan","Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science, Wako-Shi, Saitama 351-0198, Japan"],"affiliations":[{"raw_affiliation_string":"Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science , Wako-Shi, Saitama 351-0198,","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"Synapse Biology Unit, Okinawa Institute of Science and Technology Graduate University , Kunigami-gun, Okinawa 904-0495,","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Synapse Biology Unit, Okinawa Institute of Science and Technology Graduate University, Kunigami-gun, Okinawa 904-0495, Japan","institution_ids":["https://openalex.org/I142637625"]},{"raw_affiliation_string":"Laboratory for Synaptic Plasticity and Connectivity, RIKEN Centre for Brain Science, Wako-Shi, Saitama 351-0198, Japan","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5030975818","display_name":"Tatjana Tchumatchenko","orcid":"https://orcid.org/0000-0001-9137-809X"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2799391451","display_name":"University Hospital Bonn","ror":"https://ror.org/01xnwqx93","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799391451"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tatjana Tchumatchenko","raw_affiliation_strings":["Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre , Bonn 53127,","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]},{"raw_affiliation_string":"Institute of Experimental Epileptology and Cognition Research, University of Bonn Medical Centre, Bonn 53127, Germany","institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5033639113"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2799391451","https://openalex.org/I4210087099"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1068094,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.7824758291244507},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7676205635070801},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6477633714675903},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5835996866226196},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.4775993824005127},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4519484043121338},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43229109048843384},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3473842442035675},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10994097590446472}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.7824758291244507},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7676205635070801},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6477633714675903},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5835996866226196},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.4775993824005127},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4519484043121338},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43229109048843384},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3473842442035675},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10994097590446472}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003712","descriptor_name":"Dendrites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013569","descriptor_name":"Synapses","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049229","descriptor_name":"Dendritic Spines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049229","descriptor_name":"Dendritic Spines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049229","descriptor_name":"Dendritic Spines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf339","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf339","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf339/63501254/btaf339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40569855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40569855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:digital.csic.es:10261/399066","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/399066","pdf_url":"https://digital.csic.es/bitstream/10261/399066/1/SpyDen_eggl.pdf","source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:12233091","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12233091","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf339","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf339","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf339/63501254/btaf339.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1330180358","display_name":null,"funder_award_id":"CRC 1080","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3721998104","display_name":"How dendritic mRNA and protein distributions shape synaptic plasticity","funder_award_id":"945700","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8318064016","display_name":null,"funder_award_id":"Horizon","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320310697","display_name":"Joachim Herz Stiftung","ror":"https://ror.org/01j8qgg43"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320324900","display_name":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn","ror":"https://ror.org/041nas322"},{"id":"https://openalex.org/F4320335125","display_name":"RIKEN","ror":"https://ror.org/01sjwvz98"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411674718.pdf"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W1440335865","https://openalex.org/W1975923899","https://openalex.org/W1982807939","https://openalex.org/W1983553517","https://openalex.org/W1984636010","https://openalex.org/W2015159529","https://openalex.org/W2032262566","https://openalex.org/W2036581163","https://openalex.org/W2054483526","https://openalex.org/W2060412165","https://openalex.org/W2060584787","https://openalex.org/W2067065070","https://openalex.org/W2072949646","https://openalex.org/W2081321639","https://openalex.org/W2096610613","https://openalex.org/W2098556983","https://openalex.org/W2099540110","https://openalex.org/W2113189368","https://openalex.org/W2114538750","https://openalex.org/W2137841176","https://openalex.org/W2141763129","https://openalex.org/W2145023731","https://openalex.org/W2146347032","https://openalex.org/W2149906678","https://openalex.org/W2158453800","https://openalex.org/W2271476098","https://openalex.org/W2566157871","https://openalex.org/W2605892792","https://openalex.org/W2748638709","https://openalex.org/W2760721217","https://openalex.org/W2798058472","https://openalex.org/W2903629831","https://openalex.org/W2906533249","https://openalex.org/W2923798092","https://openalex.org/W2951065015","https://openalex.org/W2963374959","https://openalex.org/W2980248332","https://openalex.org/W3004825607","https://openalex.org/W3029225720","https://openalex.org/W3154954102","https://openalex.org/W3174588745","https://openalex.org/W3207511828","https://openalex.org/W3210858409","https://openalex.org/W3212846403","https://openalex.org/W4200484069","https://openalex.org/W4221093626","https://openalex.org/W4247763225","https://openalex.org/W4251169672","https://openalex.org/W4283807019","https://openalex.org/W4285999724","https://openalex.org/W4353046703","https://openalex.org/W4382631149","https://openalex.org/W4386609346","https://openalex.org/W4388901129","https://openalex.org/W4392283185","https://openalex.org/W4394856875","https://openalex.org/W4398209499","https://openalex.org/W4399455470","https://openalex.org/W4402271154","https://openalex.org/W4402357127"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2341492732","https://openalex.org/W2377979023","https://openalex.org/W3187193180","https://openalex.org/W4401741136","https://openalex.org/W2557718140","https://openalex.org/W4386470600","https://openalex.org/W4399490472","https://openalex.org/W1974930897"],"abstract_inverted_index":{"SpyDen":[0],"is":[1],"available":[2],"on":[3],"https://github.com/meggl23/SpyDen":[4],"while":[5],"the":[6],"compiled":[7],"executables":[8],"can":[9],"be":[10],"found":[11],"at":[12],"https://gin.g-node.org/CompNeuroNetworks/SpyDenTrainedNetwork.":[13]},"counts_by_year":[],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
