{"id":"https://openalex.org/W4411256979","doi":"https://doi.org/10.1093/bioinformatics/btaf333","title":"HAP-SAMPLE2: data-based resampling for association studies with admixture","display_name":"HAP-SAMPLE2: data-based resampling for association studies with admixture","publication_year":2025,"publication_date":"2025-06-01","ids":{"openalex":"https://openalex.org/W4411256979","doi":"https://doi.org/10.1093/bioinformatics/btaf333","pmid":"https://pubmed.ncbi.nlm.nih.gov/40512000"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf333","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf333/63484360/btaf333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf333/63484360/btaf333.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101601089","display_name":"George Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Sun","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, United States","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061027076","display_name":"Bryan W. Ting","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bryan W Ting","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University, Raleigh, NC 27695, United States","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016238665","display_name":"Fred A. Wright","orcid":"https://orcid.org/0000-0002-8238-6626"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fred A Wright","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","Department of Biological Sciences, North Carolina State University , Raleigh, NC 27695,","Department of Statistics, North Carolina State University , Raleigh, NC 27695,","Department of Statistics, North Carolina State University, Raleigh, NC 27695, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Biological Sciences, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Statistics, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Statistics, North Carolina State University, Raleigh, NC 27695, United States","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100701642","display_name":"Yi\u2010Hui Zhou","orcid":"https://orcid.org/0000-0002-4092-7463"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yi-Hui Zhou","raw_affiliation_strings":["Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","Department of Biological Sciences, North Carolina State University , Raleigh, NC 27695,","Department of Statistics, North Carolina State University , Raleigh, NC 27695,","Department of Statistics, North Carolina State University, Raleigh, NC 27695, United States"],"raw_orcid":"https://orcid.org/0000-0002-4092-7463","affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Biological Sciences, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Statistics, North Carolina State University , Raleigh, NC 27695,","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Statistics, North Carolina State University, Raleigh, NC 27695, United States","institution_ids":["https://openalex.org/I137902535"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5100701642"],"corresponding_institution_ids":["https://openalex.org/I137902535"],"apc_list":{"value":3989,"currency":"USD","value_usd":3989},"apc_paid":{"value":3989,"currency":"USD","value_usd":3989},"fwci":0.893,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74875775,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"41","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6689000129699707,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.6689000129699707,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.2653999924659729,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.008899999782443047,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/resampling","display_name":"Resampling","score":0.7587279081344604},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.6433805227279663},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5569702982902527},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.3412162661552429},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2863723039627075},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.25940418243408203},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.1482161581516266}],"concepts":[{"id":"https://openalex.org/C150921843","wikidata":"https://www.wikidata.org/wiki/Q1170431","display_name":"Resampling","level":2,"score":0.7587279081344604},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.6433805227279663},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5569702982902527},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3412162661552429},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2863723039627075},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.25940418243408203},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.1482161581516266},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D056726","descriptor_name":"Genetic Association Studies","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf333","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf333/63484360/btaf333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40512000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40512000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12208071","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12208071","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf333","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf333","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf333/63484360/btaf333.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411256979.pdf","grobid_xml":"https://content.openalex.org/works/W4411256979.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1573669151","https://openalex.org/W1965804446","https://openalex.org/W1973092653","https://openalex.org/W1989972194","https://openalex.org/W2007988561","https://openalex.org/W2015445985","https://openalex.org/W2024789485","https://openalex.org/W2025261434","https://openalex.org/W2029387902","https://openalex.org/W2033151532","https://openalex.org/W2063655230","https://openalex.org/W2102381029","https://openalex.org/W2104549677","https://openalex.org/W2104690544","https://openalex.org/W2126076961","https://openalex.org/W2136195349","https://openalex.org/W2148981095","https://openalex.org/W2161102342","https://openalex.org/W2963260819","https://openalex.org/W4376647344","https://openalex.org/W4386268652","https://openalex.org/W4392696419"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2052515325","https://openalex.org/W2050948537","https://openalex.org/W2767646790","https://openalex.org/W2352041579","https://openalex.org/W1488006380","https://openalex.org/W1998176685","https://openalex.org/W2896146092"],"abstract_inverted_index":{"MOTIVATION:":[0],"HAP-SAMPLE2":[1,47],"extends":[2],"the":[3,6,61,87],"functionality":[4],"of":[5],"original":[7],"HAP-SAMPLE":[8],"tool":[9,88],"for":[10,39,52,57,67,92],"simulating":[11,53],"genotype-phenotype":[12],"data,":[13],"now":[14],"with":[15,107],"features":[16],"to":[17,28,72],"handle":[18],"population":[19,68],"admixture":[20,69],"and":[21,35,42,97],"rare":[22,43,93],"variant":[23,44],"analysis.":[24],"It":[25],"allows":[26],"users":[27,71],"define":[29],"parameters":[30],"such":[31],"as":[32],"disease":[33],"prevalence":[34],"allele":[36],"effect":[37],"sizes":[38],"both":[40],"common":[41],"simulations.":[45],"RESULTS:":[46],"provides":[48],"an":[49],"efficient":[50],"means":[51],"complex":[54],"datasets,":[55],"suitable":[56],"large-scale":[58],"projects":[59],"like":[60],"1000":[62],"Genomes":[63],"Project.":[64],"Its":[65],"capabilities":[66],"allow":[70],"create":[73],"admixed":[74],"populations":[75],"or":[76],"preserve":[77],"substructures":[78],"while":[79],"introducing":[80],"novel":[81],"variation":[82],"through":[83],"artificial":[84],"recombination.":[85],"Additionally,":[86],"supports":[89],"burden":[90],"testing":[91],"variants":[94],"using":[95],"fixed":[96],"Madsen-Browning":[98],"weighting":[99],"schemes.":[100],"AVAILABILITY":[101],"AND":[102],"IMPLEMENTATION:":[103],"The":[104],"software,":[105],"along":[106],"a":[108],"detailed":[109],"vignette,":[110],"is":[111],"available":[112],"on":[113],"GitHub:":[114],"https://github.com/M3dical/HAPSAMPLE2.":[115]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
