{"id":"https://openalex.org/W4411735397","doi":"https://doi.org/10.1093/bioinformatics/btaf320","title":"SPONGE: simple prior omics network GEnerator","display_name":"SPONGE: simple prior omics network GEnerator","publication_year":2025,"publication_date":"2025-06-27","ids":{"openalex":"https://openalex.org/W4411735397","doi":"https://doi.org/10.1093/bioinformatics/btaf320","pmid":"https://pubmed.ncbi.nlm.nih.gov/40576203"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf320","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf320/63606581/btaf320.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf320/63606581/btaf320.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039959182","display_name":"Ladislav Hovan","orcid":"https://orcid.org/0000-0001-8847-9295"},"institutions":[{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Ladislav Hovan","raw_affiliation_strings":["Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318,","University of Oslo Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, , Oslo 0318,"],"raw_orcid":"https://orcid.org/0000-0001-8847-9295","affiliations":[{"raw_affiliation_string":"Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318,","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"University of Oslo Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, , Oslo 0318,","institution_ids":["https://openalex.org/I184942183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081799863","display_name":"Marieke L. Kuijjer","orcid":"https://orcid.org/0000-0001-6280-3130"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I184942183","display_name":"University of Oslo","ror":"https://ror.org/01xtthb56","country_code":"NO","type":"education","lineage":["https://openalex.org/I184942183"]}],"countries":["FI","NO"],"is_corresponding":true,"raw_author_name":"Marieke L Kuijjer","raw_affiliation_strings":["Department of Biochemistry and Developmental Biology, University of Helsinki , Helsinki 00290,","Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318,","iCAN Flagship in Digital Precision Cancer Medicine, University of Helsinki , Helsinki 00290,","University of Helsinki Department of Biochemistry and Developmental Biology, , Helsinki, 00290,","University of Helsinki iCAN Flagship in Digital Precision Cancer Medicine, , Helsinki, 00290,","University of Oslo Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, , Oslo 0318,"],"raw_orcid":"https://orcid.org/0000-0001-6280-3130","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Developmental Biology, University of Helsinki , Helsinki 00290,","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, University of Oslo , Oslo 0318,","institution_ids":["https://openalex.org/I184942183"]},{"raw_affiliation_string":"iCAN Flagship in Digital Precision Cancer Medicine, University of Helsinki , Helsinki 00290,","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki Department of Biochemistry and Developmental Biology, , Helsinki, 00290,","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Helsinki iCAN Flagship in Digital Precision Cancer Medicine, , Helsinki, 00290,","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"University of Oslo Norwegian Centre for Molecular Biosciences and Medicine (NCMBM), Nordic EMBL Partnership, , Oslo 0318,","institution_ids":["https://openalex.org/I184942183"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5081799863"],"corresponding_institution_ids":["https://openalex.org/I133731052","https://openalex.org/I184942183"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.09014931,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6761000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.6761000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.18060000240802765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.056699998676776886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8260531425476074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7021907567977905},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.6984676718711853},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5240167379379272},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.49330249428749084},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.48780444264411926},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.47585150599479675},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.45680350065231323},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42958080768585205},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3687836825847626},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3349902331829071},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2648882269859314},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24933674931526184},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12538570165634155},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.12383624911308289},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.11552995443344116}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8260531425476074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7021907567977905},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.6984676718711853},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5240167379379272},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.49330249428749084},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.48780444264411926},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.47585150599479675},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.45680350065231323},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42958080768585205},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3687836825847626},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3349902331829071},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2648882269859314},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24933674931526184},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12538570165634155},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12383624911308289},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.11552995443344116}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf320","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf320/63606581/btaf320.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40576203","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40576203","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12964359","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12964359/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf320","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf320","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf320/63606581/btaf320.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G44091114","display_name":null,"funder_award_id":"313932","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G6970925884","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8026655011","display_name":null,"funder_award_id":"187615","funder_id":"https://openalex.org/F4320323260","funder_display_name":"Universitetet i Oslo"},{"id":"https://openalex.org/G8437661840","display_name":"SCIENTIA-FELLOWS II: International Postdoctoral Fellowship Programme","funder_award_id":"801133","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320323260","display_name":"Universitetet i Oslo","ror":"https://ror.org/01xtthb56"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411735397.pdf","grobid_xml":"https://content.openalex.org/works/W4411735397.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2020672230","https://openalex.org/W2048677619","https://openalex.org/W2140952049","https://openalex.org/W2170964754","https://openalex.org/W2344167575","https://openalex.org/W2814473043","https://openalex.org/W2949475756","https://openalex.org/W3215596355","https://openalex.org/W4226187748","https://openalex.org/W4308834893","https://openalex.org/W4309506674","https://openalex.org/W4315435709","https://openalex.org/W4318027593","https://openalex.org/W4323655246","https://openalex.org/W4388615740","https://openalex.org/W4388667244","https://openalex.org/W4400353742","https://openalex.org/W4401556795"],"related_works":["https://openalex.org/W2789551765","https://openalex.org/W2130939068","https://openalex.org/W3163717165","https://openalex.org/W2114466827","https://openalex.org/W249159571","https://openalex.org/W2791736663","https://openalex.org/W2806770614","https://openalex.org/W2129949791","https://openalex.org/W2131550814","https://openalex.org/W1710460698"],"abstract_inverted_index":{"SUMMARY:":[0],"Gene":[1],"regulatory":[2,76],"networks":[3,33,120],"modelled":[4],"from":[5],"experimental":[6],"data":[7],"can":[8,172],"be":[9,173],"improved":[10],"through":[11],"the":[12,31,46,108,112,119,153,155,166,170],"use":[13,137],"of":[14,72,116,136,148],"prior":[15,32,74,91],"biological":[16,62],"knowledge,":[17],"e.g.":[18],"transcription":[19,79,99],"factor":[20],"binding.":[21],"There":[22],"are":[23,37,121],"several":[24],"tools":[25],"that":[26],"utilize":[27],"this":[28],"information.":[29,49],"However,":[30,118],"used":[34],"with":[35,107,134],"them":[36],"often":[38],"not":[39],"updated":[40],"and":[41,66,89,111,140,169],"may":[42],"fail":[43],"to":[44,58,68,81,105,157],"reflect":[45],"most":[47],"up-to-date":[48],"Here":[50],"we":[51],"present":[52],"SPONGE,":[53],"a":[54,90],"Python":[55,167],"module":[56,168],"designed":[57,104,133],"access":[59],"information":[60],"across":[61],"databases,":[63],"chiefly":[64],"JASPAR":[65],"STRING,":[67],"model":[69],"two":[70],"types":[71],"networks-a":[73],"gene":[75],"network":[77,94],"mapping":[78,95],"factors":[80],"genes":[82],"based":[83],"on":[84],"their":[85],"predicted":[86],"binding":[87],"sites,":[88],"protein-protein":[92],"interaction":[93],"potential":[96],"interactions":[97],"between":[98],"factors.":[100],"SPONGE":[101,131],"is":[102],"mainly":[103],"work":[106],"PANDA":[109],"algorithm":[110],"corresponding":[113],"NetZoo":[114],"family":[115],"tools.":[117,130],"provided":[122],"in":[123,138,175],"an":[124],"easily":[125],"adaptable":[126],"format":[127],"for":[128,146,165],"other":[129],"was":[132],"ease":[135],"mind,":[139],"it":[141],"provides":[142],"sensible":[143],"default":[144],"values":[145],"all":[147],"its":[149],"parameters":[150],"while":[151],"giving":[152],"users":[154],"freedom":[156],"fine-tune":[158],"them.":[159],"AVAILABILITY":[160],"AND":[161],"IMPLEMENTATION:":[162],"The":[163],"code":[164],"documentation":[171],"found":[174],"our":[176],"GitHub":[177],"repository.":[178]},"counts_by_year":[],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
