{"id":"https://openalex.org/W4410313413","doi":"https://doi.org/10.1093/bioinformatics/btaf295","title":"VTX: real-time high-performance molecular structure and dynamics visualization software","display_name":"VTX: real-time high-performance molecular structure and dynamics visualization software","publication_year":2025,"publication_date":"2025-05-12","ids":{"openalex":"https://openalex.org/W4410313413","doi":"https://doi.org/10.1093/bioinformatics/btaf295","pmid":"https://pubmed.ncbi.nlm.nih.gov/40353852"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf295/63155383/btaf295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf295/63155383/btaf295.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044650604","display_name":"Maxime Maria","orcid":"https://orcid.org/0009-0004-5723-1827"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210093397","display_name":"XLIM","ror":"https://ror.org/00f7srh09","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I32881790","https://openalex.org/I4210093397","https://openalex.org/I4210095849","https://openalex.org/I65806277"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Maxime Maria","raw_affiliation_strings":["XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","institution_ids":["https://openalex.org/I4210093397","https://openalex.org/I65806277"]},{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210093397","https://openalex.org/I65806277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003019788","display_name":"Simon Guionni\u00e8re","orcid":null},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Simon Guionni\u00e8re","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038489700","display_name":"Nicolas Dacquay","orcid":null},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Dacquay","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093000346","display_name":"Cyprien Plateau\u2013Holleville","orcid":"https://orcid.org/0000-0003-1510-557X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210093397","display_name":"XLIM","ror":"https://ror.org/00f7srh09","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I32881790","https://openalex.org/I4210093397","https://openalex.org/I4210095849","https://openalex.org/I65806277"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cyprien Plateau-Holleville","raw_affiliation_strings":["XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","institution_ids":["https://openalex.org/I4210093397","https://openalex.org/I65806277"]},{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210093397","https://openalex.org/I65806277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103134410","display_name":"Valentin Guillaume","orcid":"https://orcid.org/0000-0001-7920-3430"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Valentin Guillaume","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092983017","display_name":"Vincent Larroque","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210086752","display_name":"Quark Pharmaceuticals (United States)","ror":"https://ror.org/0003en535","country_code":"US","type":"company","lineage":["https://openalex.org/I4210086752"]},{"id":"https://openalex.org/I4210093397","display_name":"XLIM","ror":"https://ror.org/00f7srh09","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I32881790","https://openalex.org/I4210093397","https://openalex.org/I4210095849","https://openalex.org/I65806277"]},{"id":"https://openalex.org/I4405262918","display_name":"Qubit Pharmaceuticals","ror":"https://ror.org/002b6dg37","country_code":"FR","type":"company","lineage":["https://openalex.org/I4405262918"]},{"id":"https://openalex.org/I51409038","display_name":"Saudi Arabia Basic Industries (United States)","ror":"https://ror.org/05k25vk24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210135984","https://openalex.org/I51409038"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Vincent Larroque","raw_affiliation_strings":["Qubit Pharmaceuticals SAS, 75014 Paris,","XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","Qubit Pharmaceuticals SAS, France","XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, 75014 Paris,","institution_ids":["https://openalex.org/I4210086752","https://openalex.org/I4405262918"]},{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","institution_ids":["https://openalex.org/I4210093397","https://openalex.org/I65806277"]},{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, France","institution_ids":["https://openalex.org/I4405262918","https://openalex.org/I51409038"]},{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210093397","https://openalex.org/I65806277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116013898","display_name":"Jean Lard\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I4210086752","display_name":"Quark Pharmaceuticals (United States)","ror":"https://ror.org/0003en535","country_code":"US","type":"company","lineage":["https://openalex.org/I4210086752"]},{"id":"https://openalex.org/I4405262918","display_name":"Qubit Pharmaceuticals","ror":"https://ror.org/002b6dg37","country_code":"FR","type":"company","lineage":["https://openalex.org/I4405262918"]},{"id":"https://openalex.org/I51409038","display_name":"Saudi Arabia Basic Industries (United States)","ror":"https://ror.org/05k25vk24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210135984","https://openalex.org/I51409038"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Jean Lard\u00e9","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Qubit Pharmaceuticals SAS, 75014 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","Qubit Pharmaceuticals SAS, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, 75014 Paris,","institution_ids":["https://openalex.org/I4210086752","https://openalex.org/I4405262918"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, France","institution_ids":["https://openalex.org/I4405262918","https://openalex.org/I51409038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060639897","display_name":"Yassine Na\u00efmi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210086752","display_name":"Quark Pharmaceuticals (United States)","ror":"https://ror.org/0003en535","country_code":"US","type":"company","lineage":["https://openalex.org/I4210086752"]},{"id":"https://openalex.org/I4405262918","display_name":"Qubit Pharmaceuticals","ror":"https://ror.org/002b6dg37","country_code":"FR","type":"company","lineage":["https://openalex.org/I4405262918"]},{"id":"https://openalex.org/I51409038","display_name":"Saudi Arabia Basic Industries (United States)","ror":"https://ror.org/05k25vk24","country_code":"US","type":"company","lineage":["https://openalex.org/I4210135984","https://openalex.org/I51409038"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Yassine Naimi","raw_affiliation_strings":["Qubit Pharmaceuticals SAS, 75014 Paris,","Qubit Pharmaceuticals SAS, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, 75014 Paris,","institution_ids":["https://openalex.org/I4210086752","https://openalex.org/I4405262918"]},{"raw_affiliation_string":"Qubit Pharmaceuticals SAS, France","institution_ids":["https://openalex.org/I4405262918","https://openalex.org/I51409038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036142396","display_name":"Jean\u2010Philip Piquemal","orcid":"https://orcid.org/0000-0001-6615-9426"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I182627622","display_name":"Universit\u00e9 Sorbonne Nouvelle","ror":"https://ror.org/03z6jp965","country_code":"FR","type":"education","lineage":["https://openalex.org/I182627622"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210098902","display_name":"Laboratoire de Chimie Th\u00e9orique","ror":"https://ror.org/00tmb7y09","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210098902","https://openalex.org/I4210128300"]},{"id":"https://openalex.org/I51101395","display_name":"Universit\u00e9 Paris 1 Panth\u00e9on-Sorbonne","ror":"https://ror.org/002t25c44","country_code":"FR","type":"education","lineage":["https://openalex.org/I51101395"]},{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Jean-Philip Piquemal","raw_affiliation_strings":["Department of Biomedical Engineering, University of Texas at Austin, Austin, 78712 TX,","Institut Universitaire de France, 75231 Paris,","LCT, UMR 7616 CNRS, Sorbonne Universit\u00e9, 75005 Paris,","LCT, UMR 7616 CNRS, Sorbonne Universit\u00e9, Paris, France","Institut Universitaire de France, Paris, France","Department of Biomedical Engineering, University of Texas at Austin, Texas, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at Austin, Austin, 78712 TX,","institution_ids":["https://openalex.org/I86519309"]},{"raw_affiliation_string":"Institut Universitaire de France, 75231 Paris,","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"LCT, UMR 7616 CNRS, Sorbonne Universit\u00e9, 75005 Paris,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I39804081","https://openalex.org/I4210098902","https://openalex.org/I51101395"]},{"raw_affiliation_string":"LCT, UMR 7616 CNRS, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I182627622","https://openalex.org/I39804081","https://openalex.org/I4210098902","https://openalex.org/I51101395"]},{"raw_affiliation_string":"Institut Universitaire de France, Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Department of Biomedical Engineering, University of Texas at Austin, Texas, United States","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025068400","display_name":"Guillaume Levieux","orcid":"https://orcid.org/0000-0001-8844-4447"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Levieux","raw_affiliation_strings":["Laboratoire CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Laboratoire CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Laboratoire CEDRIC, EA 4626, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037588685","display_name":"Nathalie Lagarde","orcid":"https://orcid.org/0000-0002-6048-9800"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathalie Lagarde","raw_affiliation_strings":["Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007377103","display_name":"St\u00e9phane M\u00e9rillou","orcid":"https://orcid.org/0000-0003-2820-8076"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210093397","display_name":"XLIM","ror":"https://ror.org/00f7srh09","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I32881790","https://openalex.org/I4210093397","https://openalex.org/I4210095849","https://openalex.org/I65806277"]},{"id":"https://openalex.org/I65806277","display_name":"Universit\u00e9 de Limoges","ror":"https://ror.org/02cp04407","country_code":"FR","type":"education","lineage":["https://openalex.org/I65806277"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane M\u00e9rillou","raw_affiliation_strings":["XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges , 87000 Limoges,","institution_ids":["https://openalex.org/I4210093397","https://openalex.org/I65806277"]},{"raw_affiliation_string":"XLIM, UMR CNRS 7252, Universit\u00e9 de Limoges, Limoge, 87000, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210093397","https://openalex.org/I65806277"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087675495","display_name":"Matthieu Mont\u00e8s","orcid":"https://orcid.org/0000-0001-5921-460X"},"institutions":[{"id":"https://openalex.org/I124158823","display_name":"Conservatoire National des Arts et M\u00e9tiers","ror":"https://ror.org/0175hh227","country_code":"FR","type":"education","lineage":["https://openalex.org/I124158823","https://openalex.org/I4210134562"]},{"id":"https://openalex.org/I185839726","display_name":"Institut Universitaire de France","ror":"https://ror.org/055khg266","country_code":"FR","type":"education","lineage":["https://openalex.org/I185839726"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Matthieu Montes","raw_affiliation_strings":["Institut Universitaire de France, 75231 Paris,","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","Institut Universitaire de France, Paris, France","Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France"],"raw_orcid":"https://orcid.org/0000-0001-5921-460X","affiliations":[{"raw_affiliation_string":"Institut Universitaire de France, 75231 Paris,","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers , 75003 Paris,","institution_ids":["https://openalex.org/I124158823"]},{"raw_affiliation_string":"Institut Universitaire de France, Paris, France","institution_ids":["https://openalex.org/I185839726"]},{"raw_affiliation_string":"Laboratoire GBCM, EA 7528, Conservatoire National des Arts et M\u00e9tiers, Paris, 75003, France","institution_ids":["https://openalex.org/I124158823"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":5.7751,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.96059843,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"41","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.09790000319480896,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12327","display_name":"Various Chemistry Research Topics","score":0.09790000319480896,"subfield":{"id":"https://openalex.org/subfields/1606","display_name":"Physical and Theoretical Chemistry"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.050599999725818634,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.041600000113248825,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7480621337890625},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7038783431053162},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6363800168037415},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.5000078678131104},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.478397011756897},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.38063350319862366},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2543286085128784},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.24280476570129395},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.18118155002593994},{"id":"https://openalex.org/keywords/component-based-software-engineering","display_name":"Component-based software engineering","score":0.12590324878692627}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7480621337890625},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7038783431053162},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6363800168037415},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.5000078678131104},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.478397011756897},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.38063350319862366},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2543286085128784},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.24280476570129395},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.18118155002593994},{"id":"https://openalex.org/C174683762","wikidata":"https://www.wikidata.org/wiki/Q609588","display_name":"Component-based software engineering","level":4,"score":0.12590324878692627}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf295/63155383/btaf295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40353852","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40353852","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-04917948v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04917948","pdf_url":"https://hal.science/hal-04917948/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2025, pp.btaf295. ⟨10.1093/bioinformatics/btaf295⟩","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12202049","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12202049","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf295","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf295","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf295/63155383/btaf295.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6242501798","display_name":"Transverse Actions between advanced Ceramics & TIC","funder_award_id":"ANR-18-EURE-0017","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G643626463","display_name":null,"funder_award_id":"640283","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6876561401","display_name":null,"funder_award_id":"ANR-18","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320334322","display_name":"HORIZON EUROPE Framework Programme","ror":null},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410313413.pdf","grobid_xml":"https://content.openalex.org/works/W4410313413.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1969954768","https://openalex.org/W2029667189","https://openalex.org/W2130479394","https://openalex.org/W2152320247","https://openalex.org/W2152326664","https://openalex.org/W2291468715","https://openalex.org/W2297307165","https://openalex.org/W2883919942","https://openalex.org/W2939975123","https://openalex.org/W2981168048","https://openalex.org/W3083406432","https://openalex.org/W3094051077","https://openalex.org/W3177828909","https://openalex.org/W3211795435","https://openalex.org/W4233857083","https://openalex.org/W4317104064","https://openalex.org/W4367856503","https://openalex.org/W4378800731","https://openalex.org/W4387332205","https://openalex.org/W4392504719","https://openalex.org/W4393058800","https://openalex.org/W4396695310","https://openalex.org/W4409148148"],"related_works":["https://openalex.org/W2386674074","https://openalex.org/W834755178","https://openalex.org/W2064191515","https://openalex.org/W1984601109","https://openalex.org/W2033226981","https://openalex.org/W2736583656","https://openalex.org/W1867947061","https://openalex.org/W2004099228","https://openalex.org/W4286008520","https://openalex.org/W4312541014"],"abstract_inverted_index":{"SUMMARY:":[0],"VTX":[1,42,79,96],"is":[2,81,97,118],"a":[3,20,55],"molecular":[4,11,23,36,39],"visualization":[5,33],"software":[6],"capable":[7],"to":[8],"handle":[9],"most":[10],"structures":[12],"and":[13,38,47,54,74,85,90,100,108],"dynamics":[14,40],"trajectories":[15],"file":[16],"formats.":[17],"It":[18,65],"features":[19],"real-time":[21],"high-performance":[22],"graphics":[24],"engine,":[25],"based":[26],"on":[27,83],"modern":[28],"OpenGL,":[29],"optimized":[30],"for":[31,62,72,87,102,106],"the":[32,67],"of":[34,69],"massive":[35],"systems":[37],"trajectories.":[41],"includes":[43],"multiple":[44],"interactive":[45],"camera":[46],"user":[48,59],"interaction":[49],"features,":[50],"notably":[51],"free-fly":[52],"navigation":[53],"fully":[56],"modular":[57],"graphical":[58],"interface":[60],"designed":[61],"increased":[63],"usability.":[64],"allows":[66],"production":[68],"high-resolution":[70],"images":[71],"presentations":[73],"posters":[75],"with":[76],"custom":[77],"background.":[78],"design":[80],"focused":[82],"performance":[84],"usability":[86],"research,":[88],"teaching,":[89],"educative":[91],"purposes.":[92],"AVAILABILITY":[93],"AND":[94],"IMPLEMENTATION:":[95],"open":[98],"source":[99,116],"free":[101],"non-commercial":[103],"use.":[104],"Builds":[105],"Windows":[107],"Ubuntu":[109],"Linux":[110],"are":[111],"available":[112,119],"at":[113,120],"http://vtx.drugdesign.fr.":[114],"The":[115],"code":[117],"https://github.com/VTX-Molecular-Visualization.":[121]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}