{"id":"https://openalex.org/W4410105840","doi":"https://doi.org/10.1093/bioinformatics/btaf279","title":"OLS4: a new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem","display_name":"OLS4: a new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem","publication_year":2025,"publication_date":"2025-05-01","ids":{"openalex":"https://openalex.org/W4410105840","doi":"https://doi.org/10.1093/bioinformatics/btaf279","pmid":"https://pubmed.ncbi.nlm.nih.gov/40323307"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf279","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/5/btaf279/63054843/btaf279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/5/btaf279/63054843/btaf279.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060567781","display_name":"J. A. McLaughlin","orcid":"https://orcid.org/0000-0002-7863-624X"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"James McLaughlin","raw_affiliation_strings":["Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116014403","display_name":"Josh Lagrimas","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Josh Lagrimas","raw_affiliation_strings":["Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002940516","display_name":"Haider Iqbal","orcid":"https://orcid.org/0000-0003-0766-7425"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Haider Iqbal","raw_affiliation_strings":["Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020620537","display_name":"Helen Parkinson","orcid":"https://orcid.org/0000-0003-3035-4195"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Helen Parkinson","raw_affiliation_strings":["Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059420614","display_name":"Henriette Harmse","orcid":"https://orcid.org/0000-0001-7251-9504"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Henriette Harmse","raw_affiliation_strings":["Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus , Hinxton CB10 1SD,","institution_ids":["https://openalex.org/I1303153112"]},{"raw_affiliation_string":"Samples, Phenotypes and Ontologies Team (SPOT), EMBL-EBI, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, United Kingdom","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5060567781"],"corresponding_institution_ids":["https://openalex.org/I1303153112"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":24.6166,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.99370602,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"41","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7731021046638489},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6982910633087158},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.48244577646255493},{"id":"https://openalex.org/keywords/ecosystem","display_name":"Ecosystem","score":0.4698960483074188},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4563196301460266},{"id":"https://openalex.org/keywords/lookup-table","display_name":"Lookup table","score":0.43963339924812317},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36599403619766235},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3564729392528534},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13034343719482422},{"id":"https://openalex.org/keywords/business","display_name":"Business","score":0.12273415923118591},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.12026152014732361},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09339535236358643}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7731021046638489},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6982910633087158},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.48244577646255493},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.4698960483074188},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4563196301460266},{"id":"https://openalex.org/C134835016","wikidata":"https://www.wikidata.org/wiki/Q690265","display_name":"Lookup table","level":2,"score":0.43963339924812317},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36599403619766235},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3564729392528534},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13034343719482422},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.12273415923118591},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.12026152014732361},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09339535236358643},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057386","descriptor_name":"Search Engine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf279","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/5/btaf279/63054843/btaf279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40323307","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40323307","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12094816","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12094816","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf279","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf279","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/5/btaf279/63054843/btaf279.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410105840.pdf","grobid_xml":"https://content.openalex.org/works/W4410105840.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W183866246","https://openalex.org/W589337139","https://openalex.org/W1871852719","https://openalex.org/W1969816234","https://openalex.org/W2049625541","https://openalex.org/W2096541451","https://openalex.org/W2112466127","https://openalex.org/W2116034137","https://openalex.org/W2126434293","https://openalex.org/W2131660156","https://openalex.org/W2155723007","https://openalex.org/W2196674927","https://openalex.org/W2531883117","https://openalex.org/W2624086276","https://openalex.org/W2765161617","https://openalex.org/W2772877400","https://openalex.org/W2965518110","https://openalex.org/W3134184401","https://openalex.org/W3213275415","https://openalex.org/W3217192868","https://openalex.org/W4212959882","https://openalex.org/W4224037213","https://openalex.org/W4281661209","https://openalex.org/W4307468105","https://openalex.org/W4309306035","https://openalex.org/W4309418205","https://openalex.org/W4317438564","https://openalex.org/W4381190112","https://openalex.org/W4382599418","https://openalex.org/W4387966210","https://openalex.org/W4388616071","https://openalex.org/W4393075710","https://openalex.org/W4404046121","https://openalex.org/W4404283194","https://openalex.org/W4405231264","https://openalex.org/W4408187354","https://openalex.org/W4408398233"],"related_works":["https://openalex.org/W2798215405","https://openalex.org/W2990962948","https://openalex.org/W2084169748","https://openalex.org/W2127529229","https://openalex.org/W2355515259","https://openalex.org/W2124289628","https://openalex.org/W1822998120","https://openalex.org/W2003333417","https://openalex.org/W2165625444","https://openalex.org/W1762720839"],"abstract_inverted_index":{"The":[0],"source":[1],"code":[2],"of":[3],"OLS":[4],"is":[5,20],"available":[6,18],"at":[7,22],"https://github.com/EBISPOT/ols4":[8],"and":[9],"DOI":[10],"10.5281/zenodo.14960290":[11],"with":[12],"Apache":[13],"2.0":[14],"License.":[15],"A":[16],"freely":[17],"implementation":[19],"accessible":[21],"https://www.ebi.ac.uk/ols4.":[23]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":5}],"updated_date":"2026-04-01T17:29:45.350535","created_date":"2025-10-10T00:00:00"}
