{"id":"https://openalex.org/W4409906761","doi":"https://doi.org/10.1093/bioinformatics/btaf272","title":"Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors","display_name":"Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors","publication_year":2025,"publication_date":"2025-04-29","ids":{"openalex":"https://openalex.org/W4409906761","doi":"https://doi.org/10.1093/bioinformatics/btaf272","pmid":"https://pubmed.ncbi.nlm.nih.gov/40300094"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf272","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf272/63029068/btaf272.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf272/63029068/btaf272.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077105151","display_name":"Naama Wagner","orcid":"https://orcid.org/0000-0001-7759-3009"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Naama Wagner","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115497252","display_name":"Ella Baumer","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ella Baumer","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115040202","display_name":"Iris Lyubman","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Iris Lyubman","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117368768","display_name":"Yair Shimony","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yair Shimony","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095831119","display_name":"Noam Bracha","orcid":null},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Noam Bracha","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083589072","display_name":"Leonor Martins","orcid":"https://orcid.org/0000-0001-5400-2923"},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I4390039289","display_name":"Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos","ror":"https://ror.org/0476hs695","country_code":"PT","type":"facility","lineage":["https://openalex.org/I4390039289"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Leonor Martins","raw_affiliation_strings":["CIBIO\u2014Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, InBIO\u2014Laborat\u00f3rio Associado, Universidade do Porto , Vair\u00e3o, 4485-661,","FCUP\u2014Faculdade de Ci\u00eancias, Departamento de Biologia, Universidade do Porto , Porto, 4169-007,","Universidade do Porto FCUP\u2014Faculdade de Ci\u00eancias, Departamento de Biologia, , Porto,","Universidade do Porto CIBIO\u2014Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, InBIO\u2014Laborat\u00f3rio Associado, , Vair\u00e3o,"],"affiliations":[{"raw_affiliation_string":"CIBIO\u2014Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, InBIO\u2014Laborat\u00f3rio Associado, Universidade do Porto , Vair\u00e3o, 4485-661,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"FCUP\u2014Faculdade de Ci\u00eancias, Departamento de Biologia, Universidade do Porto , Porto, 4169-007,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Universidade do Porto FCUP\u2014Faculdade de Ci\u00eancias, Departamento de Biologia, , Porto,","institution_ids":["https://openalex.org/I182534213"]},{"raw_affiliation_string":"Universidade do Porto CIBIO\u2014Centro de Investiga\u00e7\u00e3o em Biodiversidade e Recursos Gen\u00e9ticos, InBIO\u2014Laborat\u00f3rio Associado, , Vair\u00e3o,","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4390039289"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024317371","display_name":"Neha Potnis","orcid":null},"institutions":[{"id":"https://openalex.org/I82497590","display_name":"Auburn University","ror":"https://ror.org/02v80fc35","country_code":"US","type":"education","lineage":["https://openalex.org/I82497590"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neha Potnis","raw_affiliation_strings":["Department of Entomology and Plant Pathology, Auburn University , Auburn, AL, 36849,","Auburn University Department of Entomology and Plant Pathology, , Auburn, AL,"],"affiliations":[{"raw_affiliation_string":"Department of Entomology and Plant Pathology, Auburn University , Auburn, AL, 36849,","institution_ids":["https://openalex.org/I82497590"]},{"raw_affiliation_string":"Auburn University Department of Entomology and Plant Pathology, , Auburn, AL,","institution_ids":["https://openalex.org/I82497590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041306627","display_name":"Jeff H. Chang","orcid":"https://orcid.org/0000-0002-1833-0695"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeff H Chang","raw_affiliation_strings":["Department of Botany and Plant Pathology, Oregon State University , Corvallis, OR, 97331,","Oregon State University Department of Botany and Plant Pathology, , Corvallis, Oregon,"],"affiliations":[{"raw_affiliation_string":"Department of Botany and Plant Pathology, Oregon State University , Corvallis, OR, 97331,","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Oregon State University Department of Botany and Plant Pathology, , Corvallis, Oregon,","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055880726","display_name":"Doron Teper","orcid":"https://orcid.org/0000-0002-5608-1917"},"institutions":[{"id":"https://openalex.org/I376102","display_name":"Agricultural Research Organization","ror":"https://ror.org/05hbrxp80","country_code":"IL","type":"government","lineage":["https://openalex.org/I376102"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Doron Teper","raw_affiliation_strings":["Department of Plant Pathology and Weed Research, Institute of Plant Protection Agricultural Research Organization (ARO), Volcani Center , Rishon LeZion, 7505101,","Volcani Center Department of Plant Pathology and Weed Research, Institute of Plant Protection Agricultural Research Organization (ARO), , Rishon LeZion,"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology and Weed Research, Institute of Plant Protection Agricultural Research Organization (ARO), Volcani Center , Rishon LeZion, 7505101,","institution_ids":["https://openalex.org/I376102"]},{"raw_affiliation_string":"Volcani Center Department of Plant Pathology and Weed Research, Institute of Plant Protection Agricultural Research Organization (ARO), , Rishon LeZion,","institution_ids":["https://openalex.org/I376102"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080532236","display_name":"Ralf Koebnik","orcid":"https://orcid.org/0000-0002-4419-0542"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210136436","display_name":"Institut Agro Montpelier","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210136436"]},{"id":"https://openalex.org/I4210147367","display_name":"Centre Occitanie-Montpellier","ror":"https://ror.org/03fkrcm40","country_code":"FR","type":"facility","lineage":["https://openalex.org/I4210088668","https://openalex.org/I4210147367"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ralf Koebnik","raw_affiliation_strings":["Plant Health Institute of Montpellier, University of Montpellier, CIRAD, INRAe, Institut Agro, IRD , Montpellier, 34394,","Plant Health Institute of Montpellier, University of Montpellier, CIRAD, INRAe, Institut Agro, IRD , Montpellier,"],"affiliations":[{"raw_affiliation_string":"Plant Health Institute of Montpellier, University of Montpellier, CIRAD, INRAe, Institut Agro, IRD , Montpellier, 34394,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210166444","https://openalex.org/I4210136436","https://openalex.org/I4210147367"]},{"raw_affiliation_string":"Plant Health Institute of Montpellier, University of Montpellier, CIRAD, INRAe, Institut Agro, IRD , Montpellier,","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I4210147367","https://openalex.org/I4210166444","https://openalex.org/I4210136436"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070736617","display_name":"Tal Pupko","orcid":"https://orcid.org/0000-0001-9463-2575"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Tal Pupko","raw_affiliation_strings":["The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,"],"affiliations":[{"raw_affiliation_string":"The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University , Chaim Levanon St 30 , Tel Aviv, 69978,","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Tel Aviv University The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, , Tel Aviv 69978,","institution_ids":["https://openalex.org/I16391192"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5077105151"],"corresponding_institution_ids":["https://openalex.org/I16391192"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":8.2745,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.97023459,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"41","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11684","display_name":"Vibrio bacteria research studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.7238017916679382},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6989978551864624},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6169531941413879},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.6092855930328369},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5801578760147095},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5489445924758911},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5149410367012024},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.5131383538246155},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4940822422504425},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.44192537665367126},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4329512417316437},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4133206009864807},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3735586404800415},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27398133277893066},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24023565649986267},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20542830228805542},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.15509948134422302}],"concepts":[{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.7238017916679382},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6989978551864624},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6169531941413879},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.6092855930328369},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5801578760147095},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5489445924758911},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5149410367012024},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.5131383538246155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4940822422504425},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.44192537665367126},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4329512417316437},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4133206009864807},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3735586404800415},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27398133277893066},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24023565649986267},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20542830228805542},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.15509948134422302},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069296","descriptor_name":"Type III Secretion Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069296","descriptor_name":"Type III Secretion Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069296","descriptor_name":"Type III Secretion Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069296","descriptor_name":"Type III Secretion Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069296","descriptor_name":"Type III Secretion Systems","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014974","descriptor_name":"Xanthomonas","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf272","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf272/63029068/btaf272.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40300094","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40300094","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-05516347v1","is_oa":false,"landing_page_url":"https://hal.inrae.fr/hal-05516347","pdf_url":null,"source":{"id":"https://openalex.org/S4406922466","display_name":"SPIRE - Sciences Po Institutional REpository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics, 2025, 41 (5), pp.btaf272. &#x27E8;10.1093/bioinformatics/btaf272&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:12085239","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12085239","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf272","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf272","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf272/63029068/btaf272.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G7354014674","display_name":null,"funder_award_id":"2020-51181-32154","funder_id":"https://openalex.org/F4320306114","funder_display_name":"U.S. Department of Agriculture"}],"funders":[{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320322596","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409906761.pdf","grobid_xml":"https://content.openalex.org/works/W4409906761.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1925709767","https://openalex.org/W1959778618","https://openalex.org/W2003336381","https://openalex.org/W2036917159","https://openalex.org/W2065745266","https://openalex.org/W2096730875","https://openalex.org/W2101783575","https://openalex.org/W2945022544","https://openalex.org/W2950954328","https://openalex.org/W2981645939","https://openalex.org/W3086459034","https://openalex.org/W3177500196","https://openalex.org/W4205773061","https://openalex.org/W4210920677","https://openalex.org/W4307871192","https://openalex.org/W4324020990","https://openalex.org/W4327550249","https://openalex.org/W4367188907","https://openalex.org/W4381157992","https://openalex.org/W4381331222","https://openalex.org/W4389966140","https://openalex.org/W4401449610"],"related_works":["https://openalex.org/W1530034981","https://openalex.org/W4320492283","https://openalex.org/W4214695225","https://openalex.org/W2783284266","https://openalex.org/W3197607994","https://openalex.org/W4309090929","https://openalex.org/W3020059968","https://openalex.org/W4380992933","https://openalex.org/W2171209136","https://openalex.org/W2035241411"],"abstract_inverted_index":{"Effectidor":[0,18],"II":[1,19],"is":[2,10,20],"available":[3,11,21],"at:":[4,12,22],"https://effectidor.tau.ac.il":[5],"and":[6,31],"the":[7,28,32],"source":[8,25],"code":[9,26],"https://github.com/naamawagner/Effectidor.":[13],"A":[14],"stand-alone":[15],"version":[16,30],"of":[17],"https://github.com/naamawagner/Effectidor/tree/StandAlone.":[23],"The":[24],"for":[27],"standalone":[29],"data":[33],"used":[34],"in":[35,41],"this":[36],"work":[37],"are":[38],"also":[39],"provided":[40],"https://doi.org/10.5281/zenodo.15081636.":[42]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
