{"id":"https://openalex.org/W4410019893","doi":"https://doi.org/10.1093/bioinformatics/btaf264","title":"STABIX: summary-statistic-based GWAS indexing and compression","display_name":"STABIX: summary-statistic-based GWAS indexing and compression","publication_year":2025,"publication_date":"2025-04-29","ids":{"openalex":"https://openalex.org/W4410019893","doi":"https://doi.org/10.1093/bioinformatics/btaf264","pmid":"https://pubmed.ncbi.nlm.nih.gov/40315153"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf264","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf264/63045443/btaf264.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf264/63045443/btaf264.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Kristen Schneider","orcid":"https://orcid.org/0009-0004-4757-4500"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kristen Schneider","raw_affiliation_strings":["BioFrontiers Institute, University of Colorado , Boulder, Boulder, 80303 CO,","Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","University of Colorado Department of Computer Science, , Boulder, Boulder, CO","University of Colorado BioFrontiers Institute, , Boulder, Boulder, CO"],"affiliations":[{"raw_affiliation_string":"BioFrontiers Institute, University of Colorado , Boulder, Boulder, 80303 CO,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado Department of Computer Science, , Boulder, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado BioFrontiers Institute, , Boulder, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029622983","display_name":"S.P. Walker","orcid":"https://orcid.org/0000-0003-2299-7932"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon Walker","raw_affiliation_strings":["Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","University of Colorado Department of Computer Science, , Boulder, Boulder, CO"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado Department of Computer Science, , Boulder, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110221823","display_name":"Chris Gignoux","orcid":null},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Gignoux","raw_affiliation_strings":["Colorado Center for Personalized Medicine, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","Department of Biomedical Informatics, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","Anschutz Medical Campus Department of Biomedical Informatics, , , Aurora, CO","Anschutz Medical Campus Colorado Center for Personalized Medicine, , , Aurora, CO","University of Colorado Department of Biomedical Informatics, , , Aurora, CO","University of Colorado Colorado Center for Personalized Medicine, , , Aurora, CO"],"affiliations":[{"raw_affiliation_string":"Colorado Center for Personalized Medicine, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Anschutz Medical Campus Department of Biomedical Informatics, , , Aurora, CO","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Anschutz Medical Campus Colorado Center for Personalized Medicine, , , Aurora, CO","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"University of Colorado Department of Biomedical Informatics, , , Aurora, CO","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"University of Colorado Colorado Center for Personalized Medicine, , , Aurora, CO","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077092443","display_name":"Ryan M. Layer","orcid":"https://orcid.org/0000-0002-5823-3232"},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ryan Layer","raw_affiliation_strings":["BioFrontiers Institute, University of Colorado , Boulder, Boulder, 80303 CO,","Department of Biomedical Informatics, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","University of Colorado Department of Biomedical Informatics, , , Aurora, CO","University of Colorado BioFrontiers Institute, , Boulder, Boulder, CO","Anschutz Medical Campus Department of Biomedical Informatics, , , Aurora, CO","University of Colorado Department of Computer Science, , Boulder, Boulder, CO"],"affiliations":[{"raw_affiliation_string":"BioFrontiers Institute, University of Colorado , Boulder, Boulder, 80303 CO,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado, Anschutz Medical Campus , Aurora, 80045 CO,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Computer Science, University of Colorado , Boulder, Boulder, 80309 CO,","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"University of Colorado Department of Biomedical Informatics, , , Aurora, CO","institution_ids":["https://openalex.org/I921990950"]},{"raw_affiliation_string":"University of Colorado BioFrontiers Institute, , Boulder, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]},{"raw_affiliation_string":"Anschutz Medical Campus Department of Biomedical Informatics, , , Aurora, CO","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"University of Colorado Department of Computer Science, , Boulder, Boulder, CO","institution_ids":["https://openalex.org/I188538660"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I188538660"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.10654812,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.74431312084198},{"id":"https://openalex.org/keywords/statistic","display_name":"Statistic","score":0.624317467212677},{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.6222979426383972},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"Genome-wide association study","score":0.5846287608146667},{"id":"https://openalex.org/keywords/file-size","display_name":"File size","score":0.5140558481216431},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.46286141872406006},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4586688280105591},{"id":"https://openalex.org/keywords/data-file","display_name":"Data file","score":0.44859516620635986},{"id":"https://openalex.org/keywords/summary-statistics","display_name":"Summary statistics","score":0.4392998218536377},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.4160812199115753},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39486458897590637},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3066565990447998},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.26884734630584717},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24030736088752747},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14506176114082336},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11279407143592834},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.09911814332008362},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09686598181724548},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09607398509979248}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.74431312084198},{"id":"https://openalex.org/C89128539","wikidata":"https://www.wikidata.org/wiki/Q1949963","display_name":"Statistic","level":2,"score":0.624317467212677},{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.6222979426383972},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.5846287608146667},{"id":"https://openalex.org/C2776029614","wikidata":"https://www.wikidata.org/wiki/Q1146367","display_name":"File size","level":2,"score":0.5140558481216431},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.46286141872406006},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4586688280105591},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.44859516620635986},{"id":"https://openalex.org/C32792767","wikidata":"https://www.wikidata.org/wiki/Q1370484","display_name":"Summary statistics","level":2,"score":0.4392998218536377},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.4160812199115753},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39486458897590637},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3066565990447998},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.26884734630584717},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24030736088752747},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14506176114082336},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11279407143592834},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.09911814332008362},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09686598181724548},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09607398509979248},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D044962","descriptor_name":"Data Compression","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf264","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf264/63045443/btaf264.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40315153","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40315153","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12980329","is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12980329/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf264","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf264","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf264/63045443/btaf264.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4410019893.pdf","grobid_xml":"https://content.openalex.org/works/W4410019893.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W2073836327","https://openalex.org/W2077239836","https://openalex.org/W2082704080","https://openalex.org/W2106294125","https://openalex.org/W2134783591","https://openalex.org/W2142386149","https://openalex.org/W2163013660","https://openalex.org/W2163924952","https://openalex.org/W2522116600","https://openalex.org/W2559028527","https://openalex.org/W2725988230","https://openalex.org/W2901303766","https://openalex.org/W2944540884","https://openalex.org/W2958615822","https://openalex.org/W3100917749","https://openalex.org/W3195285310","https://openalex.org/W4206235696","https://openalex.org/W4220731372","https://openalex.org/W4289890799","https://openalex.org/W4304695497","https://openalex.org/W4315644439","https://openalex.org/W4392862921"],"related_works":["https://openalex.org/W3032858184","https://openalex.org/W2793346709","https://openalex.org/W2090798606","https://openalex.org/W2566091055","https://openalex.org/W1966326070","https://openalex.org/W212602161","https://openalex.org/W2368195534","https://openalex.org/W2210852504","https://openalex.org/W2377810582","https://openalex.org/W2371615582"],"abstract_inverted_index":{"Software":[0],"freely":[1],"available":[2],"for":[3],"download":[4],"at":[5],"GitHub:":[6],"https://github.com/kristen-schneider/stabix/.":[7]},"counts_by_year":[],"updated_date":"2026-04-17T18:11:37.981687","created_date":"2025-10-10T00:00:00"}
