{"id":"https://openalex.org/W4409726527","doi":"https://doi.org/10.1093/bioinformatics/btaf181","title":"Integration of multi-source gene interaction networks and omics data with graph attention networks to identify novel disease genes","display_name":"Integration of multi-source gene interaction networks and omics data with graph attention networks to identify novel disease genes","publication_year":2025,"publication_date":"2025-04-22","ids":{"openalex":"https://openalex.org/W4409726527","doi":"https://doi.org/10.1093/bioinformatics/btaf181","pmid":"https://pubmed.ncbi.nlm.nih.gov/40266878"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf181","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf181/62993955/btaf181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf181/62993955/btaf181.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106426973","display_name":"Kaiyuan Yang","orcid":"https://orcid.org/0009-0007-9041-159X"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]},{"id":"https://openalex.org/I4210133325","display_name":"Institute of Process Engineering","ror":"https://ror.org/03j4x9j18","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210133325"]}],"countries":["CL","CN"],"is_corresponding":true,"raw_author_name":"Kaiyuan Yang","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing 100190,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing 100190,","institution_ids":["https://openalex.org/I4210133325"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087182888","display_name":"Jiabei Cheng","orcid":"https://orcid.org/0009-0008-7601-4800"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]}],"countries":["CL","CN"],"is_corresponding":false,"raw_author_name":"Jiabei Cheng","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Medical Robot Research Institute, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240,","Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Medical Robot Research Institute, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057593998","display_name":"Shenghao Cao","orcid":"https://orcid.org/0000-0002-2203-1460"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]}],"countries":["CL","CN"],"is_corresponding":false,"raw_author_name":"Shenghao Cao","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091365447","display_name":"Xiaoyong Pan","orcid":"https://orcid.org/0000-0001-5010-464X"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]}],"countries":["CL","CN"],"is_corresponding":false,"raw_author_name":"Xiaoyong Pan","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076024045","display_name":"Hong\u2010Bin Shen","orcid":"https://orcid.org/0000-0002-4029-3325"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]}],"countries":["CL","CN"],"is_corresponding":false,"raw_author_name":"Hong-bin Shen","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Shanghai Jiao Tong University, and Key Laboratory of System Control and Information Processing, Ministry of Education of China Institute of Image Processing and Pattern Recognition, , Shanghai, 200240,","institution_ids":["https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100711465","display_name":"Jin Cheng","orcid":"https://orcid.org/0000-0003-2535-4422"},"institutions":[{"id":"https://openalex.org/I1327237609","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934","country_code":"CN","type":"government","lineage":["https://openalex.org/I1327237609","https://openalex.org/I4210127390"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210100356","display_name":"Ministry of Education","ror":"https://ror.org/018f7hf93","country_code":"CL","type":"government","lineage":["https://openalex.org/I4210100356"]},{"id":"https://openalex.org/I4210144102","display_name":"Wuhu Hit Robot Technology Research Institute","ror":"https://ror.org/049w4dp92","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210144102"]}],"countries":["CL","CN"],"is_corresponding":false,"raw_author_name":"Jin Cheng","raw_affiliation_strings":["Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","Medical Robot Research Institute, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240,","Shanghai Jiao Tong University Medical Robot Research Institute, School of Biomedical Engineering,"],"affiliations":[{"raw_affiliation_string":"Institute of Image Processing and Pattern Recognition, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Key Laboratory of System Control and Information Processing, Ministry of Education of China , Shanghai 200240,","institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I4210100356"]},{"raw_affiliation_string":"Medical Robot Research Institute, School of Biomedical Engineering, Shanghai Jiao Tong University , Shanghai 200240,","institution_ids":["https://openalex.org/I183067930"]},{"raw_affiliation_string":"Shanghai Jiao Tong University Medical Robot Research Institute, School of Biomedical Engineering,","institution_ids":["https://openalex.org/I4210144102","https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082583182","display_name":"Ye Yuan","orcid":"https://orcid.org/0000-0002-4270-8002"},"institutions":[{"id":"https://openalex.org/I4210133325","display_name":"Institute of Process Engineering","ror":"https://ror.org/03j4x9j18","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210133325"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ye Yuan","raw_affiliation_strings":["Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing 100190,","Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing, 100190,"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing 100190,","institution_ids":["https://openalex.org/I4210133325"]},{"raw_affiliation_string":"Key Laboratory of Biopharmaceutical Preparation and Delivery, State Key Laboratory of Biochemical Engineering, Institute of Process Engineering, Chinese Academy of Sciences , Beijing, 100190,","institution_ids":["https://openalex.org/I4210133325"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5106426973"],"corresponding_institution_ids":["https://openalex.org/I1327237609","https://openalex.org/I183067930","https://openalex.org/I4210100356","https://openalex.org/I4210133325"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8073,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.71242443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"7","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5834645628929138},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5513644814491272},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5323617458343506},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47915953397750854},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.4715423882007599},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.45494627952575684},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.44205591082572937},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3529232144355774},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.34897011518478394},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27254027128219604},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.22959864139556885},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.10787293314933777},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.08887770771980286}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5834645628929138},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5513644814491272},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5323617458343506},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47915953397750854},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.4715423882007599},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.45494627952575684},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.44205591082572937},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3529232144355774},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.34897011518478394},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27254027128219604},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22959864139556885},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.10787293314933777},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.08887770771980286},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf181","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf181/62993955/btaf181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40266878","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40266878","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12270254","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12270254","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf181","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf181","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf181/62993955/btaf181.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409726527.pdf","grobid_xml":"https://content.openalex.org/works/W4409726527.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1212523263","https://openalex.org/W1964196484","https://openalex.org/W1964733653","https://openalex.org/W1975788172","https://openalex.org/W1993370700","https://openalex.org/W2041187413","https://openalex.org/W2051301793","https://openalex.org/W2052121459","https://openalex.org/W2059870548","https://openalex.org/W2084379028","https://openalex.org/W2094486967","https://openalex.org/W2098023402","https://openalex.org/W2117513900","https://openalex.org/W2118304778","https://openalex.org/W2120614573","https://openalex.org/W2138856536","https://openalex.org/W2150198686","https://openalex.org/W2150420891","https://openalex.org/W2159482845","https://openalex.org/W2175370850","https://openalex.org/W2290603990","https://openalex.org/W2403934794","https://openalex.org/W2537679995","https://openalex.org/W2558586574","https://openalex.org/W2600407040","https://openalex.org/W2611585461","https://openalex.org/W2789326515","https://openalex.org/W2795165696","https://openalex.org/W2886093832","https://openalex.org/W2897044637","https://openalex.org/W2900569176","https://openalex.org/W2902028677","https://openalex.org/W2939247829","https://openalex.org/W2964192728","https://openalex.org/W2967209644","https://openalex.org/W2981272910","https://openalex.org/W2981741796","https://openalex.org/W2985945238","https://openalex.org/W2996140569","https://openalex.org/W2999674525","https://openalex.org/W3005898972","https://openalex.org/W3006368828","https://openalex.org/W3012714918","https://openalex.org/W3015823093","https://openalex.org/W3049103650","https://openalex.org/W3156270925","https://openalex.org/W3160512018","https://openalex.org/W3179208720","https://openalex.org/W3195716625","https://openalex.org/W3208869639","https://openalex.org/W3217393517","https://openalex.org/W4200416517","https://openalex.org/W4206568924","https://openalex.org/W4221115243","https://openalex.org/W4251519441","https://openalex.org/W4290047903","https://openalex.org/W4294216483","https://openalex.org/W4306165653","https://openalex.org/W4315786991","https://openalex.org/W4317434503","https://openalex.org/W4367856759","https://openalex.org/W4382631249","https://openalex.org/W4383711368","https://openalex.org/W4385798507","https://openalex.org/W4385880433"],"related_works":["https://openalex.org/W2131250617","https://openalex.org/W4233034052","https://openalex.org/W2371030422","https://openalex.org/W4366601060","https://openalex.org/W2364878181","https://openalex.org/W2189035925","https://openalex.org/W3116256330","https://openalex.org/W3016731444","https://openalex.org/W4385259577","https://openalex.org/W2073720652"],"abstract_inverted_index":{"DGP-AMIO":[0],"is":[1],"publicly":[2],"available":[3],"at":[4],"https://github.com/yangkaiyuan1027/DGP-AMIO.":[5]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
