{"id":"https://openalex.org/W4412454151","doi":"https://doi.org/10.1093/bioinformatics/btaf177","title":"Unicorn: enhancing single-cell Hi-C data with blind super-resolution for 3D genome structure reconstruction","display_name":"Unicorn: enhancing single-cell Hi-C data with blind super-resolution for 3D genome structure reconstruction","publication_year":2025,"publication_date":"2025-07-01","ids":{"openalex":"https://openalex.org/W4412454151","doi":"https://doi.org/10.1093/bioinformatics/btaf177","pmid":"https://pubmed.ncbi.nlm.nih.gov/40662782"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/Supplement_1/i475/63745313/btaf177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/Supplement_1/i475/63745313/btaf177.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057751086","display_name":"M. Chandrashekar","orcid":"https://orcid.org/0000-0002-1224-362X"},"institutions":[{"id":"https://openalex.org/I888729015","display_name":"University of Colorado Colorado Springs","ror":"https://ror.org/054spjc55","country_code":"US","type":"education","lineage":["https://openalex.org/I888729015"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mohan Kumar B Chandrashekar","raw_affiliation_strings":["Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,","institution_ids":["https://openalex.org/I888729015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017005305","display_name":"Rajesh Menon","orcid":"https://orcid.org/0000-0002-4777-376X"},"institutions":[{"id":"https://openalex.org/I888729015","display_name":"University of Colorado Colorado Springs","ror":"https://ror.org/054spjc55","country_code":"US","type":"education","lineage":["https://openalex.org/I888729015"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rohit Menon","raw_affiliation_strings":["Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,","institution_ids":["https://openalex.org/I888729015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092127014","display_name":"Samuel Olowofila","orcid":null},"institutions":[{"id":"https://openalex.org/I888729015","display_name":"University of Colorado Colorado Springs","ror":"https://ror.org/054spjc55","country_code":"US","type":"education","lineage":["https://openalex.org/I888729015"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel Olowofila","raw_affiliation_strings":["Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,","institution_ids":["https://openalex.org/I888729015"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003283556","display_name":"Oluwatosin Oluwadare","orcid":"https://orcid.org/0000-0002-5264-2342"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]},{"id":"https://openalex.org/I888729015","display_name":"University of Colorado Colorado Springs","ror":"https://ror.org/054spjc55","country_code":"US","type":"education","lineage":["https://openalex.org/I888729015"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oluwatosin Oluwadare","raw_affiliation_strings":["Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , 13001 East 17th Place , Aurora, CO, 80045,","Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Colorado Anschutz Medical Campus , 13001 East 17th Place , Aurora, CO, 80045,","institution_ids":["https://openalex.org/I51713134"]},{"raw_affiliation_string":"Department of Computer Science, University of Colorado, Colorado Springs , 1420 Austin Bluffs Parkway , Colorado Springs, CO, 80918,","institution_ids":["https://openalex.org/I888729015"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5057751086"],"corresponding_institution_ids":["https://openalex.org/I888729015"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15201945,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"Supplement_1","first_page":"i475","last_page":"i483"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7612704634666443},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47078150510787964},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.45654818415641785},{"id":"https://openalex.org/keywords/fidelity","display_name":"Fidelity","score":0.4391598105430603},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.42487800121307373},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4078849256038666},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4032467007637024},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.13378015160560608},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11928144097328186}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7612704634666443},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47078150510787964},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.45654818415641785},{"id":"https://openalex.org/C2776459999","wikidata":"https://www.wikidata.org/wiki/Q2119376","display_name":"Fidelity","level":2,"score":0.4391598105430603},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.42487800121307373},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4078849256038666},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4032467007637024},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.13378015160560608},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11928144097328186},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/Supplement_1/i475/63745313/btaf177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40662782","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40662782","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12261411","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12261411","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf177","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf177","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/Supplement_1/i475/63745313/btaf177.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G212309183","display_name":null,"funder_award_id":"R35GM150402","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5096665487","display_name":null,"funder_award_id":"2153205","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5921281487","display_name":null,"funder_award_id":"number","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4412454151.pdf","grobid_xml":"https://content.openalex.org/works/W4412454151.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1965863160","https://openalex.org/W2161151688","https://openalex.org/W2508457857","https://openalex.org/W2569095710","https://openalex.org/W2594764564","https://openalex.org/W2597274540","https://openalex.org/W2803256172","https://openalex.org/W2806062033","https://openalex.org/W2920923857","https://openalex.org/W2936970738","https://openalex.org/W2951559295","https://openalex.org/W2953462601","https://openalex.org/W2972380686","https://openalex.org/W2982661386","https://openalex.org/W3007609047","https://openalex.org/W3008783161","https://openalex.org/W3015754908","https://openalex.org/W3092290620","https://openalex.org/W3098616015","https://openalex.org/W3120518704","https://openalex.org/W3156421803","https://openalex.org/W3165454401","https://openalex.org/W3177624796","https://openalex.org/W3180346860","https://openalex.org/W3194728593","https://openalex.org/W3212860783","https://openalex.org/W4220661565","https://openalex.org/W4285006497","https://openalex.org/W4376121484","https://openalex.org/W4385294448","https://openalex.org/W4399498407","https://openalex.org/W4400140616","https://openalex.org/W4403097720"],"related_works":["https://openalex.org/W2381850946","https://openalex.org/W4380449851","https://openalex.org/W3125091513","https://openalex.org/W4248383205","https://openalex.org/W4234745530","https://openalex.org/W2146383839","https://openalex.org/W2231829109","https://openalex.org/W2789577489","https://openalex.org/W2372185929","https://openalex.org/W3013984414"],"abstract_inverted_index":{"Unicorn":[0],"implementation":[1],"is":[2],"publicly":[3],"accessible":[4],"at":[5],"https://github.com/OluwadareLab/Unicorn.":[6]},"counts_by_year":[],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
