{"id":"https://openalex.org/W4411701636","doi":"https://doi.org/10.1093/bioinformatics/btaf163","title":"Comment on \u201cContrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction\u201d by Sun and Gao","display_name":"Comment on \u201cContrastive pre-training and 3D convolution neural network for RNA and small molecule binding affinity prediction\u201d by Sun and Gao","publication_year":2025,"publication_date":"2025-06-01","ids":{"openalex":"https://openalex.org/W4411701636","doi":"https://doi.org/10.1093/bioinformatics/btaf163","pmid":"https://pubmed.ncbi.nlm.nih.gov/40567017"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf163","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf163/63535703/btaf163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf163/63535703/btaf163.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102810785","display_name":"Sowmya Ramaswamy Krishnan","orcid":"https://orcid.org/0000-0001-5404-3266"},"institutions":[{"id":"https://openalex.org/I55215948","display_name":"Tata Consultancy Services (India)","ror":"https://ror.org/01b9n8m42","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210086519","https://openalex.org/I55215948"]},{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Sowmya Ramaswamy Krishnan","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras , Chennai 600036,","TCS Research (Life Sciences Division), Tata Consultancy Services , Hyderabad 500081,"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras , Chennai 600036,","institution_ids":["https://openalex.org/I24676775"]},{"raw_affiliation_string":"TCS Research (Life Sciences Division), Tata Consultancy Services , Hyderabad 500081,","institution_ids":["https://openalex.org/I55215948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042990614","display_name":"Arijit Roy","orcid":"https://orcid.org/0000-0002-1961-2483"},"institutions":[{"id":"https://openalex.org/I55215948","display_name":"Tata Consultancy Services (India)","ror":"https://ror.org/01b9n8m42","country_code":"IN","type":"company","lineage":["https://openalex.org/I4210086519","https://openalex.org/I55215948"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Arijit Roy","raw_affiliation_strings":["TCS Research (Life Sciences Division), Tata Consultancy Services , Hyderabad 500081,"],"affiliations":[{"raw_affiliation_string":"TCS Research (Life Sciences Division), Tata Consultancy Services , Hyderabad 500081,","institution_ids":["https://openalex.org/I55215948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046879365","display_name":"M. Michael Gromiha","orcid":"https://orcid.org/0000-0002-1776-4096"},"institutions":[{"id":"https://openalex.org/I24676775","display_name":"Indian Institute of Technology Madras","ror":"https://ror.org/03v0r5n49","country_code":"IN","type":"facility","lineage":["https://openalex.org/I24676775"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"M Michael Gromiha","raw_affiliation_strings":["Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras , Chennai 600036,"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, Bhupat and Jyoti Mehta School of Biosciences, Indian Institute of Technology Madras , Chennai 600036,","institution_ids":["https://openalex.org/I24676775"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102810785"],"corresponding_institution_ids":["https://openalex.org/I24676775","https://openalex.org/I55215948"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.8425,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74289096,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"41","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.7634560465812683},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.571058452129364},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5426308512687683},{"id":"https://openalex.org/keywords/training","display_name":"Training (meteorology)","score":0.5305911302566528},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5035752654075623},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4497227966785431},{"id":"https://openalex.org/keywords/circular-convolution","display_name":"Circular convolution","score":0.421004056930542},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.41730767488479614},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4119587242603302},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34203004837036133},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33953115344047546},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2819090187549591},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.185634583234787},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16645020246505737},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10359489917755127},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08861693739891052},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.06605261564254761}],"concepts":[{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.7634560465812683},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.571058452129364},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5426308512687683},{"id":"https://openalex.org/C2777211547","wikidata":"https://www.wikidata.org/wiki/Q17141490","display_name":"Training (meteorology)","level":2,"score":0.5305911302566528},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5035752654075623},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4497227966785431},{"id":"https://openalex.org/C194980680","wikidata":"https://www.wikidata.org/wiki/Q245450","display_name":"Circular convolution","level":5,"score":0.421004056930542},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.41730767488479614},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4119587242603302},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34203004837036133},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33953115344047546},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2819090187549591},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.185634583234787},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16645020246505737},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10359489917755127},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08861693739891052},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.06605261564254761},{"id":"https://openalex.org/C102519508","wikidata":"https://www.wikidata.org/wiki/Q6520159","display_name":"Fourier transform","level":2,"score":0.0},{"id":"https://openalex.org/C76563020","wikidata":"https://www.wikidata.org/wiki/Q4817582","display_name":"Fractional Fourier transform","level":4,"score":0.0},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0},{"id":"https://openalex.org/C203024314","wikidata":"https://www.wikidata.org/wiki/Q1365258","display_name":"Fourier analysis","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf163","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf163/63535703/btaf163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40567017","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40567017","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12198490","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12198490","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf163","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf163","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/6/btaf163/63535703/btaf163.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4411701636.pdf","grobid_xml":"https://content.openalex.org/works/W4411701636.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W2001266427","https://openalex.org/W2134967712","https://openalex.org/W2148512505","https://openalex.org/W2587598315","https://openalex.org/W3127634170","https://openalex.org/W4309670138","https://openalex.org/W4311860580","https://openalex.org/W4388719212","https://openalex.org/W4391132552","https://openalex.org/W4393055202"],"related_works":["https://openalex.org/W3106959200","https://openalex.org/W2964954556","https://openalex.org/W2385700956","https://openalex.org/W1796097737","https://openalex.org/W2133280289","https://openalex.org/W2232752250","https://openalex.org/W2143803328","https://openalex.org/W2382152453","https://openalex.org/W2171853844","https://openalex.org/W2110827308"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
