{"id":"https://openalex.org/W4409454457","doi":"https://doi.org/10.1093/bioinformatics/btaf161","title":"MS1FA: Shiny App for the Annotation of Redundant Features in Untargeted Metabolomics Datasets","display_name":"MS1FA: Shiny App for the Annotation of Redundant Features in Untargeted Metabolomics Datasets","publication_year":2025,"publication_date":"2025-04-15","ids":{"openalex":"https://openalex.org/W4409454457","doi":"https://doi.org/10.1093/bioinformatics/btaf161","pmid":"https://pubmed.ncbi.nlm.nih.gov/40234241"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf161","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf161","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf161/62934398/btaf161.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf161/62934398/btaf161.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043513376","display_name":"Ruibing Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ruibing Shi","raw_affiliation_strings":["Helmholtz Centre for Infection Research Biostatistics Research Group, , Braunschweig,"],"affiliations":[{"raw_affiliation_string":"Helmholtz Centre for Infection Research Biostatistics Research Group, , Braunschweig,","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049605606","display_name":"Frank Klawonn","orcid":"https://orcid.org/0000-0001-9613-182X"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I2799859273","display_name":"Ostfalia University of Applied Sciences","ror":"https://ror.org/01bk10867","country_code":"DE","type":"education","lineage":["https://openalex.org/I2799859273"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank Klawonn","raw_affiliation_strings":["Helmholtz Centre for Infection Research Biostatistics Research Group, , Braunschweig,","Ostfalia University of Applied Sciences Department of Computer Science, , Wolfenbuettel,"],"affiliations":[{"raw_affiliation_string":"Helmholtz Centre for Infection Research Biostatistics Research Group, , Braunschweig,","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"Ostfalia University of Applied Sciences Department of Computer Science, , Wolfenbuettel,","institution_ids":["https://openalex.org/I2799859273"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042401229","display_name":"Mark Br\u00f6nstrup","orcid":"https://orcid.org/0000-0002-8971-7045"},"institutions":[{"id":"https://openalex.org/I114112103","display_name":"Leibniz University Hannover","ror":"https://ror.org/0304hq317","country_code":"DE","type":"education","lineage":["https://openalex.org/I114112103"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mark Br\u00f6nstrup","raw_affiliation_strings":["Helmholtz Centre for Infection Research Department of Chemical Biology, , Braunschweig,","Leibnitz University Hannover Institute of Organic Chemistry, , Hannover,","partner site Hannover-Braunschweig German Centre for Infection Research (DZIF), ,"],"affiliations":[{"raw_affiliation_string":"Helmholtz Centre for Infection Research Department of Chemical Biology, , Braunschweig,","institution_ids":["https://openalex.org/I4210124929"]},{"raw_affiliation_string":"Leibnitz University Hannover Institute of Organic Chemistry, , Hannover,","institution_ids":["https://openalex.org/I114112103"]},{"raw_affiliation_string":"partner site Hannover-Braunschweig German Centre for Infection Research (DZIF), ,","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057865858","display_name":"Raimo Franke","orcid":"https://orcid.org/0000-0002-5407-5521"},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Raimo Franke","raw_affiliation_strings":["Helmholtz Centre for Infection Research Department of Chemical Biology, , Braunschweig,"],"affiliations":[{"raw_affiliation_string":"Helmholtz Centre for Infection Research Department of Chemical Biology, , Braunschweig,","institution_ids":["https://openalex.org/I4210124929"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043513376"],"corresponding_institution_ids":["https://openalex.org/I4210124929"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06857297,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"5","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8079358339309692},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7827163338661194},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.6447508335113525},{"id":"https://openalex.org/keywords/table","display_name":"Table (database)","score":0.5123590230941772},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4608042240142822},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4495302140712738},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.4137864112854004},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40412479639053345},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.24552232027053833},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14879196882247925},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09937125444412231}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8079358339309692},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7827163338661194},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.6447508335113525},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.5123590230941772},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4608042240142822},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4495302140712738},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.4137864112854004},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40412479639053345},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.24552232027053833},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14879196882247925},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09937125444412231},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf161","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf161","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf161/62934398/btaf161.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40234241","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40234241","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12069231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12069231","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf161","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf161","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf161/62934398/btaf161.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409454457.pdf","grobid_xml":"https://content.openalex.org/works/W4409454457.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W4283390424","https://openalex.org/W2137270828","https://openalex.org/W1976072307","https://openalex.org/W4205440119"],"abstract_inverted_index":{"MS1FA":[0],"is":[1],"freely":[2],"accessible":[3],"at":[4,13],"https://ms1fa.helmholtz-hzi.de.":[5],"The":[6],"source":[7],"code":[8],"and":[9,15],"data":[10],"are":[11,16],"available":[12],"https://github.com/RuibingS/MS1FA_RShiny_dashboard":[14],"archived":[17],"with":[18],"the":[19],"DOI":[20],"10.5281/zenodo.15118962.":[21]},"counts_by_year":[],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
