{"id":"https://openalex.org/W4408762886","doi":"https://doi.org/10.1093/bioinformatics/btaf127","title":"RNALoc-LM: RNA subcellular localization prediction using pre-trained RNA language model","display_name":"RNALoc-LM: RNA subcellular localization prediction using pre-trained RNA language model","publication_year":2025,"publication_date":"2025-03-22","ids":{"openalex":"https://openalex.org/W4408762886","doi":"https://doi.org/10.1093/bioinformatics/btaf127","pmid":"https://pubmed.ncbi.nlm.nih.gov/40119908"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf127","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf127/62523870/btaf127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf127/62523870/btaf127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":"https://orcid.org/0000-0002-1726-0955","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091974952","display_name":"Xinyu Zhang","orcid":"https://orcid.org/0000-0002-6379-6582"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinyu Zhang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346319","display_name":"Yiming Li","orcid":"https://orcid.org/0000-0001-8376-6244"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065367210","display_name":"Chengqian Lu","orcid":"https://orcid.org/0000-0001-9201-6912"},"institutions":[{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengqian Lu","raw_affiliation_strings":["School of Computer Science, Key Laboratory of Intelligent Computing and Information Processing, Xiangtan University , Xiangtan, Hunan 411105,","School of Computer Science, Key Laboratory of Intelligent Computing and Information Processing, Xiangtan University, Xiangtan, Hunan 411105, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Key Laboratory of Intelligent Computing and Information Processing, Xiangtan University , Xiangtan, Hunan 411105,","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"School of Computer Science, Key Laboratory of Intelligent Computing and Information Processing, Xiangtan University, Xiangtan, Hunan 411105, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077105641","display_name":"Rui Yin","orcid":"https://orcid.org/0000-0002-1403-0396"},"institutions":[{"id":"https://openalex.org/I2800717037","display_name":"University of Florida Health","ror":"https://ror.org/04tk2gy88","country_code":"US","type":"education","lineage":["https://openalex.org/I2800717037"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rui Yin","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, University of Florida , Gainesville, FL 32603,","Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida 32603, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, University of Florida , Gainesville, FL 32603,","institution_ids":["https://openalex.org/I2800717037"]},{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, University of Florida, Gainesville, Florida 32603, United States","institution_ids":["https://openalex.org/I2800717037"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112879504","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":null,"display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China"],"raw_orcid":"https://orcid.org/0000-0002-0188-1394","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University , Changsha, Hunan 410083,","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, Hunan 410083, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":3.8943,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.93540087,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"41","issue":"4","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7789999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.7789999842643738,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.14900000393390656,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.035100001841783524,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.7630574703216553},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6980840563774109},{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.6395128965377808},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5715372562408447},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.531003475189209},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5039717555046082},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.46250244975090027},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.44924232363700867},{"id":"https://openalex.org/keywords/code","display_name":"Code (set theory)","score":0.4403298795223236},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.42827239632606506},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4165861904621124},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3547309935092926},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.32785511016845703},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2097700536251068},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.15959066152572632},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12540575861930847}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.7630574703216553},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6980840563774109},{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.6395128965377808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5715372562408447},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.531003475189209},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5039717555046082},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.46250244975090027},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.44924232363700867},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.4403298795223236},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.42827239632606506},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4165861904621124},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3547309935092926},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.32785511016845703},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2097700536251068},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.15959066152572632},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12540575861930847},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf127","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf127/62523870/btaf127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40119908","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40119908","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11978386","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11978386","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf127","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf127/62523870/btaf127.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7200000286102295}],"awards":[{"id":"https://openalex.org/G5874166562","display_name":null,"funder_award_id":"2023JJ40763","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G6363746905","display_name":null,"funder_award_id":"62472445","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4408762886.pdf"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W2004872614","https://openalex.org/W2086629747","https://openalex.org/W2090227993","https://openalex.org/W2097606916","https://openalex.org/W2105349784","https://openalex.org/W2106637741","https://openalex.org/W2157009395","https://openalex.org/W2398883032","https://openalex.org/W2754846502","https://openalex.org/W2789926271","https://openalex.org/W2799341160","https://openalex.org/W2808950870","https://openalex.org/W2899322113","https://openalex.org/W2901218091","https://openalex.org/W3006475160","https://openalex.org/W3020929333","https://openalex.org/W3026307143","https://openalex.org/W3034046925","https://openalex.org/W3081856356","https://openalex.org/W3089631827","https://openalex.org/W3111567820","https://openalex.org/W3117084002","https://openalex.org/W3124828689","https://openalex.org/W3126993891","https://openalex.org/W3198604700","https://openalex.org/W3199924206","https://openalex.org/W3201334827","https://openalex.org/W4205653843","https://openalex.org/W4210567506","https://openalex.org/W4288041544","https://openalex.org/W4292262904","https://openalex.org/W4294992958","https://openalex.org/W4310665480","https://openalex.org/W4312094581","https://openalex.org/W4381157939","https://openalex.org/W4384663343","https://openalex.org/W4389925851","https://openalex.org/W4391575908","https://openalex.org/W4401942611","https://openalex.org/W4403287916","https://openalex.org/W4404035652","https://openalex.org/W6712910813","https://openalex.org/W6725105739"],"related_works":["https://openalex.org/W2468279273","https://openalex.org/W2361861616","https://openalex.org/W2354198838","https://openalex.org/W1989130879","https://openalex.org/W2263699433","https://openalex.org/W2103419012","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282"],"abstract_inverted_index":{"MOTIVATION:":[0],"Accurately":[1],"predicting":[2,92,116],"RNA":[3,58,87,93,112,117,124,129,156,191,198],"subcellular":[4,28,45,94,118],"localization":[5,29,46],"is":[6,147,208],"crucial":[7],"for":[8,91,115,178],"understanding":[9],"the":[10,27,44,54,103,155,187,190,196],"cellular":[11],"functions":[12],"and":[13,33,73,135,140,168],"regulatory":[14],"mechanisms":[15],"of":[16,30,37,47,50,56,189],"RNAs.":[17,51],"Although":[18],"many":[19],"computational":[20],"methods":[21],"have":[22],"been":[23],"developed":[24],"to":[25,41,127,149],"predict":[26,43],"lncRNAs,":[31],"miRNAs,":[32],"circRNAs,":[34],"very":[35],"few":[36],"them":[38],"are":[39],"designed":[40],"simultaneously":[42],"multiple":[48],"types":[49],"In":[52,97],"addition,":[53],"emergence":[55],"pre-trained":[57,86,111,123,197],"language":[59,88,113,125,199],"model":[60,114,126],"has":[61],"shown":[62],"remarkable":[63],"performance":[64],"in":[65,84],"various":[66],"bioinformatics":[67],"tasks,":[68],"such":[69],"as":[70],"structure":[71],"prediction":[72],"functional":[74],"annotation.":[75],"Despite":[76],"these":[77],"advancements,":[78],"there":[79],"remains":[80],"a":[81,110,122],"significant":[82],"gap":[83],"applying":[85],"models":[89],"specifically":[90],"localization.":[95,119],"RESULTS:":[96],"this":[98],"study,":[99],"we":[100],"proposed":[101],"RNALoc-LM,":[102],"first":[104],"interpretable":[105],"deep-learning":[106,166],"framework":[107],"that":[108,161],"leverages":[109],"RNALoc-LM":[120,162,205],"uses":[121],"encode":[128],"sequences,":[130],"then":[131],"captures":[132],"local":[133],"patterns":[134],"long-range":[136],"dependencies":[137],"through":[138],"TextCNN":[139],"BiLSTM":[141],"modules.":[142],"A":[143],"multi-head":[144],"attention":[145],"mechanism":[146],"used":[148],"focus":[150],"on":[151],"important":[152,180],"regions":[153],"within":[154],"sequences.":[157],"The":[158,204,212],"results":[159],"demonstrate":[160],"significantly":[163],"outperforms":[164],"both":[165],"baselines":[167],"existing":[169],"state-of-the-art":[170],"predictors.":[171],"Additionally,":[172],"motif":[173],"analysis":[174],"highlights":[175],"RNALoc-LM's":[176],"potential":[177],"discovering":[179],"motifs,":[181],"while":[182],"an":[183],"ablation":[184],"study":[185],"confirms":[186],"effectiveness":[188],"sequence":[192],"embeddings":[193],"generated":[194],"by":[195],"model.":[200],"AVAILABILITY":[201],"AND":[202],"IMPLEMENTATION:":[203],"web":[206],"server":[207],"available":[209],"at":[210],"http://csuligroup.com:8000/RNALoc-LM.":[211],"source":[213],"code":[214],"can":[215],"be":[216],"obtained":[217],"from":[218],"https://github.com/CSUBioGroup/RNALoc-LM.":[219]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":5}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
