{"id":"https://openalex.org/W4408333110","doi":"https://doi.org/10.1093/bioinformatics/btaf106","title":"BioArchLinux: community-driven fresh reproducible software repository for life sciences","display_name":"BioArchLinux: community-driven fresh reproducible software repository for life sciences","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408333110","doi":"https://doi.org/10.1093/bioinformatics/btaf106","pmid":"https://pubmed.ncbi.nlm.nih.gov/40067093"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf106","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf106/62375471/btaf106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf106/62375471/btaf106.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Guoyi Zhang","orcid":"https://orcid.org/0000-0002-3426-9273"},"institutions":[{"id":"https://openalex.org/I1328215151","display_name":"Australian Museum","ror":"https://ror.org/02zv4ka60","country_code":"AU","type":"archive","lineage":["https://openalex.org/I1328215151"]},{"id":"https://openalex.org/I31746571","display_name":"UNSW Sydney","ror":"https://ror.org/03r8z3t63","country_code":"AU","type":"education","lineage":["https://openalex.org/I31746571"]},{"id":"https://openalex.org/I4210163172","display_name":"Environmental Earth Sciences","ror":"https://ror.org/04rnwed46","country_code":"AU","type":"other","lineage":["https://openalex.org/I4210163172"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Guoyi Zhang","raw_affiliation_strings":["Australian Museum Research Institute, Australian Museum , 1 William St , Sydney, NSW 2010,","Evolution & Ecology Research Centre, School of Biological, Earth, Environmental Sciences, UNSW Sydney , Sydney, NSW 2052,","Evolution & Ecology Research Centre, School of Biological, Earth, Environmental Sciences, UNSW Sydney, Australia","Australian Museum Research Institute, Australian Museum, Sydney, Australia"],"raw_orcid":"https://orcid.org/0000-0002-3426-9273","affiliations":[{"raw_affiliation_string":"Australian Museum Research Institute, Australian Museum , 1 William St , Sydney, NSW 2010,","institution_ids":["https://openalex.org/I1328215151"]},{"raw_affiliation_string":"Evolution & Ecology Research Centre, School of Biological, Earth, Environmental Sciences, UNSW Sydney , Sydney, NSW 2052,","institution_ids":["https://openalex.org/I4210163172"]},{"raw_affiliation_string":"Evolution & Ecology Research Centre, School of Biological, Earth, Environmental Sciences, UNSW Sydney, Australia","institution_ids":["https://openalex.org/I4210163172","https://openalex.org/I31746571"]},{"raw_affiliation_string":"Australian Museum Research Institute, Australian Museum, Sydney, Australia","institution_ids":["https://openalex.org/I1328215151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116587706","display_name":"Pekka Ristola","orcid":null},"institutions":[{"id":"https://openalex.org/I4210122519","display_name":"Biocenter Finland","ror":"https://ror.org/03aay6c48","country_code":"FI","type":"facility","lineage":["https://openalex.org/I4210122519"]},{"id":"https://openalex.org/I4210165672","display_name":"Biostruxs (United States)","ror":"https://ror.org/03gk3wr33","country_code":"US","type":"company","lineage":["https://openalex.org/I4210165672"]}],"countries":["FI","US"],"is_corresponding":false,"raw_author_name":"Pekka Ristola","raw_affiliation_strings":["BioArchLinux Member , Helsinki, 00100,","BioArchLinux member, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioArchLinux Member , Helsinki, 00100,","institution_ids":["https://openalex.org/I4210165672"]},{"raw_affiliation_string":"BioArchLinux member, Helsinki, Finland","institution_ids":["https://openalex.org/I4210122519"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051420630","display_name":"Han Su","orcid":"https://orcid.org/0000-0001-6328-9372"},"institutions":[{"id":"https://openalex.org/I4210099020","display_name":"Beijing Biocytogen (China)","ror":"https://ror.org/01spyyb53","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210099020"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Su","raw_affiliation_strings":["BioArchLinux Member , Beijing, 100000,","BioArchLinux member, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioArchLinux Member , Beijing, 100000,","institution_ids":["https://openalex.org/I4210099020"]},{"raw_affiliation_string":"BioArchLinux member, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108694258","display_name":"Bipin Kumar","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100303","display_name":"Biotech Park","ror":"https://ror.org/00mv0vt78","country_code":"IN","type":"government","lineage":["https://openalex.org/I4210100303"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bipin Kumar","raw_affiliation_strings":["Obront Biotech Pvt. Ltd. , Hyderabad, 500007,","Obront Biotech Pvt. Ltd, Hyderabad, India"],"raw_orcid":"https://orcid.org/0000-0002-9157-061X","affiliations":[{"raw_affiliation_string":"Obront Biotech Pvt. Ltd. , Hyderabad, 500007,","institution_ids":["https://openalex.org/I4210100303"]},{"raw_affiliation_string":"Obront Biotech Pvt. Ltd, Hyderabad, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100714040","display_name":"Boyu Zhang","orcid":"https://orcid.org/0000-0003-1339-2173"},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Boyu Zhang","raw_affiliation_strings":["Beijing Forestry University , Beijing, 100083,","Beijing Forestry University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Forestry University , Beijing, 100083,","institution_ids":["https://openalex.org/I31683504"]},{"raw_affiliation_string":"Beijing Forestry University, Beijing, China","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100654818","display_name":"Yujin Hu","orcid":"https://orcid.org/0000-0003-3825-4316"},"institutions":[{"id":"https://openalex.org/I4210099586","display_name":"Shenzhen Research Institute of Big Data","ror":"https://ror.org/00z1gwf89","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210099586"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yujin Hu","raw_affiliation_strings":["Shenzhen Research Institute of Big Data , Shenzhen, 518172,","Shenzhen Research Institute of Big Data, Shenzhen, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Research Institute of Big Data , Shenzhen, 518172,","institution_ids":["https://openalex.org/I4210099586"]},{"raw_affiliation_string":"Shenzhen Research Institute of Big Data, Shenzhen, China","institution_ids":["https://openalex.org/I4210099586"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021287228","display_name":"Michael G. Elliot","orcid":"https://orcid.org/0000-0003-3374-2409"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michael G Elliot","raw_affiliation_strings":["Department of Evolution, University of Groningen , Groningen, 9700 AB,","Department of Evolution, University of Groningen, Groningen, Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-3374-2409","affiliations":[{"raw_affiliation_string":"Department of Evolution, University of Groningen , Groningen, 9700 AB,","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Department of Evolution, University of Groningen, Groningen, Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087868164","display_name":"Viktor Drobot","orcid":null},"institutions":[{"id":"https://openalex.org/I9115533","display_name":"Moscow Polytechnic University","ror":"https://ror.org/03paz2a60","country_code":"RU","type":"education","lineage":["https://openalex.org/I9115533"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Viktor Drobot","raw_affiliation_strings":["Pharm InnTech LLC , Moscow, 127299, Russia","Pharm InnTech LLC , Moscow, Russia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pharm InnTech LLC , Moscow, 127299, Russia","institution_ids":["https://openalex.org/I9115533"]},{"raw_affiliation_string":"Pharm InnTech LLC , Moscow, Russia","institution_ids":[]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jie Zhu","orcid":"https://orcid.org/0000-0002-5789-6296"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]},{"id":"https://openalex.org/I4210126943","display_name":"Pixel Magic Systems (China)","ror":"https://ror.org/03ag4ep03","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210126943"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Jie Zhu","raw_affiliation_strings":["Li Ka Shing Institute of Health Sciences, Faculty of Medicine, The Chinese University of Hong Kong , Hong Kong SAR 999077,","Microbiota I-Center (MagIC) , Hong Kong SAR 999077,","Li Ka Shing Institute of Health Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, 999077, China","Microbiota I-Center (MagIC), Hong Kong SAR, 999077, China"],"raw_orcid":"https://orcid.org/0000-0002-5789-6296","affiliations":[{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences, Faculty of Medicine, The Chinese University of Hong Kong , Hong Kong SAR 999077,","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Microbiota I-Center (MagIC) , Hong Kong SAR 999077,","institution_ids":["https://openalex.org/I4210126943"]},{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, 999077, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"Microbiota I-Center (MagIC), Hong Kong SAR, 999077, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032682113","display_name":"Jens Staal","orcid":"https://orcid.org/0000-0003-2664-3357"},"institutions":[{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jens Staal","raw_affiliation_strings":["Department of Biomedical Molecular Biology, Ghent University , 9000,","Department of Biomedical Molecular Biology, Ghent University, Belgium"],"raw_orcid":"https://orcid.org/0000-0003-2664-3357","affiliations":[{"raw_affiliation_string":"Department of Biomedical Molecular Biology, Ghent University , 9000,","institution_ids":["https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Biomedical Molecular Biology, Ghent University, Belgium","institution_ids":["https://openalex.org/I32597200"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061398546","display_name":"Martin Larralde","orcid":"https://orcid.org/0000-0002-3947-4444"},"institutions":[{"id":"https://openalex.org/I1303691731","display_name":"European Molecular Biology Organization","ror":"https://ror.org/04wfr2810","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I1303691731"]},{"id":"https://openalex.org/I2800006345","display_name":"Leiden University Medical Center","ror":"https://ror.org/05xvt9f17","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2800006345"]},{"id":"https://openalex.org/I4210153543","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560","https://openalex.org/I4210153543"]}],"countries":["DE","NL"],"is_corresponding":false,"raw_author_name":"Martin Larralde","raw_affiliation_strings":["Leiden University Center for Infectious Diseases, Leiden University Medical Center (LUMC) , Leiden, 2300 RA,","Structural and Computational Biology Unit, EMBL , Heidelberg, 69117,","Structural and Computational Biology Unit, EMBL Heidelberg, Germany","Leiden University Center for Infectious Diseases, Leiden University Medical Center (LUMC), Leiden, Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-3947-4444","affiliations":[{"raw_affiliation_string":"Leiden University Center for Infectious Diseases, Leiden University Medical Center (LUMC) , Leiden, 2300 RA,","institution_ids":["https://openalex.org/I2800006345"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, EMBL , Heidelberg, 69117,","institution_ids":["https://openalex.org/I4210153543","https://openalex.org/I1303691731"]},{"raw_affiliation_string":"Structural and Computational Biology Unit, EMBL Heidelberg, Germany","institution_ids":[]},{"raw_affiliation_string":"Leiden University Center for Infectious Diseases, Leiden University Medical Center (LUMC), Leiden, Netherlands","institution_ids":["https://openalex.org/I2800006345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100424618","display_name":"Shun Wang","orcid":"https://orcid.org/0000-0002-2037-2632"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shun Wang","raw_affiliation_strings":["JASP Team Member , Shenzhen, 518000,","JASP team member , China Shenzhen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"JASP Team Member , Shenzhen, 518000,","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"JASP team member , China Shenzhen","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024872678","display_name":"Yun Kyu Yi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099020","display_name":"Beijing Biocytogen (China)","ror":"https://ror.org/01spyyb53","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210099020"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Yi","raw_affiliation_strings":["BioArchLinux Member , Beijing, 100000,","BioArchLinux member, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioArchLinux Member , Beijing, 100000,","institution_ids":["https://openalex.org/I4210099020"]},{"raw_affiliation_string":"BioArchLinux member, Beijing, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035043415","display_name":"Haoran Yu","orcid":"https://orcid.org/0000-0003-4335-0740"},"institutions":[{"id":"https://openalex.org/I4210115513","display_name":"Xi\u2019an University","ror":"https://ror.org/01zzmf129","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210115513"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haoran Yu","raw_affiliation_strings":["Xi\u2019an University , Xi\u2019an, 710065,","Xi'an University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xi\u2019an University , Xi\u2019an, 710065,","institution_ids":["https://openalex.org/I4210115513"]},{"raw_affiliation_string":"Xi'an University, Xi'an, China","institution_ids":["https://openalex.org/I4210115513"]}]}],"institutions":[],"countries_distinct_count":10,"institutions_distinct_count":14,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":18.2286,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.98739761,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8865000009536743,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8865000009536743,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.03060000017285347,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.021700000390410423,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7134684324264526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6901576519012451},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5545140504837036},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.523202657699585},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5017566680908203},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4327021539211273},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.28034117817878723}],"concepts":[{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7134684324264526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6901576519012451},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5545140504837036},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.523202657699585},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5017566680908203},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4327021539211273},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.28034117817878723}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/bioinformatics/btaf106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf106","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf106/62375471/btaf106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40067093","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40067093","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:archive.ugent.be:01JP4ZPRRPNR1V2BW8P0979PZH","is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/01JP4ZPRRPNR1V2BW8P0979PZH","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 1367-4811","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:openaire/ed1d0627-ac15-4e11-a1a1-0b5b842030f4","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/ed1d0627-ac15-4e11-a1a1-0b5b842030f4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Zhang, G, Ristola, P, Su, H, Kumar, B, Zhang, B, Hu, Y, Elliot, M G, Drobot, V, Zhu, J, Staal, J, Larralde, M, Wang, S, Yi, Y & Yu, H 2025, 'BioArchLinux : Community-driven fresh reproducible software repository for life sciences', Bioinformatics, vol. 41, no. 3, btaf106. https://doi.org/10.1093/bioinformatics/btaf106","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:archive.ugent.be:01JW90ZYR0ZFWKAY7DFVKGXSS7","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-01JW90ZYR0ZFWKAY7DFVKGXSS7","pdf_url":"https://biblio.ugent.be/publication/01JW90ZYR0ZFWKAY7DFVKGXSS7/file/01JW912METPX9MZ8MWS33VFSN7.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1367-4811","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11925497","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11925497","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/ed1d0627-ac15-4e11-a1a1-0b5b842030f4","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/ed1d0627-ac15-4e11-a1a1-0b5b842030f4","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zhang, G, Ristola, P, Su, H, Kumar, B, Zhang, B, Hu, Y, Elliot, M G, Drobot, V, Zhu, J, Staal, J, Larralde, M, Wang, S, Yi, Y & Yu, H 2025, 'BioArchLinux : Community-driven fresh reproducible software repository for life sciences', Bioinformatics, vol. 41, no. 3, btaf106. https://doi.org/10.1093/bioinformatics/btaf106","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf106","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf106","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf106/62375471/btaf106.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.6000000238418579,"display_name":"Responsible consumption and production"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4408333110.pdf"},"referenced_works_count":8,"referenced_works":["https://openalex.org/W2108075537","https://openalex.org/W2406493898","https://openalex.org/W2413797628","https://openalex.org/W2765745983","https://openalex.org/W3000329479","https://openalex.org/W3184440621","https://openalex.org/W4226096495","https://openalex.org/W4401464022"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2618286804","https://openalex.org/W2329643025","https://openalex.org/W2002770077","https://openalex.org/W3131163342","https://openalex.org/W2092256833","https://openalex.org/W2142369114","https://openalex.org/W2361728394","https://openalex.org/W3043142516","https://openalex.org/W2146142316"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,59,105],"BioArchLinux":[2,36,89],"project":[3],"was":[4],"initiated":[5],"to":[6,23,49,122],"address":[7],"challenges":[8],"in":[9],"bioinformatics":[10,53,93],"software":[11,43],"reproducibility":[12],"and":[13,27,45,70,82,99,108,115,118,124],"freshness.":[14],"Relying":[15],"on":[16],"Arch":[17],"Linux's":[18],"user-driven":[19],"ecosystem,":[20],"we":[21],"aim":[22],"create":[24],"a":[25,38,85,91,97],"comprehensive":[26],"continuously":[28],"updated":[29],"repository":[30,60,94],"for":[31,41,66,72],"life":[32],"sciences":[33],"research.":[34],"RESULTS:":[35],"provides":[37],"PKGBUILD-based":[39],"system":[40],"seamless":[42],"packaging":[44],"maintenance,":[46],"enabling":[47],"users":[48],"access":[50],"the":[51],"latest":[52],"tools":[54,109],"across":[55,77],"multiple":[56],"programming":[57],"languages.":[58],"includes":[61],"Docker":[62],"images,":[63],"Windows":[64],"Subsystem":[65],"Linux":[67],"(WSL)":[68],"support,":[69],"Junest":[71],"nonroot":[73],"environments,":[74],"enhancing":[75],"accessibility":[76],"platforms.":[78],"Although":[79],"being":[80],"developed":[81],"maintained":[83],"by":[84],"small":[86],"core":[87],"team,":[88],"is":[90],"fast-growing":[92],"that":[95],"offers":[96],"participatory":[98],"community-driven":[100],"environment.":[101],"AVAILABILITY":[102],"AND":[103],"IMPLEMENTATION:":[104],"repository,":[106],"documentation,":[107],"are":[110,120],"freely":[111],"available":[112],"at":[113],"https://bioarchlinux.org":[114],"https://github.com/BioArchLinux.":[116],"Users":[117],"developers":[119],"encouraged":[121],"contribute":[123],"expand":[125],"this":[126],"open-source":[127],"initiative.":[128]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
