{"id":"https://openalex.org/W4407861150","doi":"https://doi.org/10.1093/bioinformatics/btaf086","title":"SpectroPipeR\u2014a streamlining post Spectronaut\u00ae DIA-MS data analysis R package","display_name":"SpectroPipeR\u2014a streamlining post Spectronaut\u00ae DIA-MS data analysis R package","publication_year":2025,"publication_date":"2025-02-22","ids":{"openalex":"https://openalex.org/W4407861150","doi":"https://doi.org/10.1093/bioinformatics/btaf086","pmid":"https://pubmed.ncbi.nlm.nih.gov/39985446"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf086","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf086/62052352/btaf086.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf086/62052352/btaf086.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085641552","display_name":"Stephan Michalik","orcid":"https://orcid.org/0000-0002-6550-0132"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stephan Michalik","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057758431","display_name":"Elke Hammer","orcid":"https://orcid.org/0000-0002-1507-0402"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Elke Hammer","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","German Centre for Cardiovascular Research (DZHK), Partner Site Greifswald , Greifswald 17475,","German Centre for Cardiovascular Research (DZHK), Greifswald, D-17475, Germany","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Partner Site Greifswald , Greifswald 17475,","institution_ids":["https://openalex.org/I4210127591","https://openalex.org/I2799318839"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Greifswald, D-17475, Germany","institution_ids":["https://openalex.org/I4210127591"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022720360","display_name":"Leif Steil","orcid":"https://orcid.org/0000-0002-0733-8421"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Leif Steil","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049738324","display_name":"Manuela Gesell Salazar","orcid":"https://orcid.org/0000-0002-6727-1978"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Manuela Gesell Salazar","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025972060","display_name":"Christian Hentschker","orcid":null},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Hentschker","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073207947","display_name":"Kristin Surmann","orcid":"https://orcid.org/0009-0009-7305-3457"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kristin Surmann","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088781486","display_name":"Larissa M. Busch","orcid":"https://orcid.org/0000-0002-9545-6355"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Larissa M Busch","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047320723","display_name":"Thomas Sura","orcid":"https://orcid.org/0000-0003-4078-6522"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Sura","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085667735","display_name":"Uwe V\u00f6lker","orcid":"https://orcid.org/0000-0002-5689-3448"},"institutions":[{"id":"https://openalex.org/I2799318839","display_name":"Universit\u00e4tsmedizin Greifswald","ror":"https://ror.org/025vngs54","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2799318839"]},{"id":"https://openalex.org/I36522303","display_name":"Universit\u00e4t Greifswald","ror":"https://ror.org/00r1edq15","country_code":"DE","type":"education","lineage":["https://openalex.org/I36522303"]},{"id":"https://openalex.org/I4210127591","display_name":"German Centre for Cardiovascular Research","ror":"https://ror.org/031t5w623","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127591","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uwe V\u00f6lker","raw_affiliation_strings":["Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","German Centre for Cardiovascular Research (DZHK), Partner Site Greifswald , Greifswald 17475,","Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","German Centre for Cardiovascular Research (DZHK), Greifswald, D-17475, Germany"],"affiliations":[{"raw_affiliation_string":"Department Functional Genomics, Interfaculty Institute of Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, MV 17475,","institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Partner Site Greifswald , Greifswald 17475,","institution_ids":["https://openalex.org/I4210127591","https://openalex.org/I2799318839"]},{"raw_affiliation_string":"Interfaculty Institute of Genetics and Functional Genomics, Department Functional Genomics, University Medicine Greifswald, Greifswald, Germany","institution_ids":["https://openalex.org/I2799318839"]},{"raw_affiliation_string":"German Centre for Cardiovascular Research (DZHK), Greifswald, D-17475, Germany","institution_ids":["https://openalex.org/I4210127591"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5085641552"],"corresponding_institution_ids":["https://openalex.org/I2799318839","https://openalex.org/I36522303"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":11.2477,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.98747756,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.8344572186470032},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8096864223480225},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.7190073132514954},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.620585024356842},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5469262599945068},{"id":"https://openalex.org/keywords/database-normalization","display_name":"Database normalization","score":0.5390068888664246},{"id":"https://openalex.org/keywords/statistical-analysis","display_name":"Statistical analysis","score":0.47820472717285156},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.4734850823879242},{"id":"https://openalex.org/keywords/software-package","display_name":"Software package","score":0.4595765769481659},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4489648640155792},{"id":"https://openalex.org/keywords/multivariate-statistics","display_name":"Multivariate statistics","score":0.4446293115615845},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3310468792915344},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2572519779205322},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.15390920639038086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.11368310451507568},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.10679525136947632},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.08982682228088379}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.8344572186470032},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8096864223480225},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.7190073132514954},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.620585024356842},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5469262599945068},{"id":"https://openalex.org/C162984825","wikidata":"https://www.wikidata.org/wiki/Q339072","display_name":"Database normalization","level":3,"score":0.5390068888664246},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.47820472717285156},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.4734850823879242},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.4595765769481659},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4489648640155792},{"id":"https://openalex.org/C161584116","wikidata":"https://www.wikidata.org/wiki/Q1952580","display_name":"Multivariate statistics","level":2,"score":0.4446293115615845},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3310468792915344},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2572519779205322},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.15390920639038086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.11368310451507568},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.10679525136947632},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.08982682228088379},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf086","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf086/62052352/btaf086.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39985446","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39985446","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:europepmc.org:10705411","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11893148","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf086","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf086","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf086/62052352/btaf086.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407861150.pdf"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W2062859898","https://openalex.org/W2114165700","https://openalex.org/W2128551987","https://openalex.org/W2529750106","https://openalex.org/W2735494737","https://openalex.org/W2751895478","https://openalex.org/W2991106430","https://openalex.org/W2999283618","https://openalex.org/W3012843216","https://openalex.org/W3092096557","https://openalex.org/W4246713717","https://openalex.org/W4327895872","https://openalex.org/W4387157173","https://openalex.org/W4390913720","https://openalex.org/W4396858058","https://openalex.org/W4402414406"],"related_works":["https://openalex.org/W2982252354","https://openalex.org/W2728564446","https://openalex.org/W3045904767","https://openalex.org/W3156537409","https://openalex.org/W2161868542","https://openalex.org/W2140163842","https://openalex.org/W2747931568","https://openalex.org/W2914550539","https://openalex.org/W2792883187","https://openalex.org/W2098339479"],"abstract_inverted_index":{"The":[0],"SpectroPipeR":[1],"package":[2],"(manual:":[3],"https://stemicha.github.io/SpectroPipeR/)":[4],"was":[5],"written":[6],"in":[7],"R":[8],"and":[9],"is":[10],"freely":[11],"available":[12],"on":[13],"GitHub":[14],"(https://github.com/stemicha/SpectroPipeR).":[15]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":12}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}