{"id":"https://openalex.org/W4407851917","doi":"https://doi.org/10.1093/bioinformatics/btaf079","title":"AskBeacon\u2014performing genomic data exchange and analytics with natural language","display_name":"AskBeacon\u2014performing genomic data exchange and analytics with natural language","publication_year":2025,"publication_date":"2025-02-22","ids":{"openalex":"https://openalex.org/W4407851917","doi":"https://doi.org/10.1093/bioinformatics/btaf079","pmid":"https://pubmed.ncbi.nlm.nih.gov/39985504"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039351950","display_name":"Anuradha Wickramarachchi","orcid":"https://orcid.org/0000-0003-4160-5965"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Anuradha Wickramarachchi","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114617327","display_name":"Shakila Tonni","orcid":null},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Shakila Tonni","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075492420","display_name":"S. Majumdar","orcid":null},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sonali Majumdar","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041251183","display_name":"Sarvnaz Karimi","orcid":"https://orcid.org/0000-0002-4927-3937"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sarvnaz Karimi","raw_affiliation_strings":["Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia"],"affiliations":[{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2015,","institution_ids":["https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Data61, Commonwealth Scientific and Industrial Research Organisation, Sydney, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037656140","display_name":"Sulev K\u00f5ks","orcid":null},"institutions":[{"id":"https://openalex.org/I176790772","display_name":"Murdoch University","ror":"https://ror.org/00r4sry34","country_code":"AU","type":"education","lineage":["https://openalex.org/I176790772"]},{"id":"https://openalex.org/I4210144648","display_name":"Perron Institute for Neurological and Translational Science","ror":"https://ror.org/04yn72m09","country_code":"AU","type":"facility","lineage":["https://openalex.org/I4210144648"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sulev K\u00f5ks","raw_affiliation_strings":["Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University , Perth, WA 6150,","Perron Institute for Neurological and Translational Science , Perth, WA 6009,","Perron Institute for Neurological and Translational Science, Perth, WA 6009, Australia","Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia"],"affiliations":[{"raw_affiliation_string":"Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University , Perth, WA 6150,","institution_ids":["https://openalex.org/I176790772"]},{"raw_affiliation_string":"Perron Institute for Neurological and Translational Science , Perth, WA 6009,","institution_ids":[]},{"raw_affiliation_string":"Perron Institute for Neurological and Translational Science, Perth, WA 6009, Australia","institution_ids":["https://openalex.org/I4210144648"]},{"raw_affiliation_string":"Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia","institution_ids":["https://openalex.org/I176790772"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074922155","display_name":"Brendan Hosking","orcid":"https://orcid.org/0000-0003-4018-2489"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Brendan Hosking","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040272750","display_name":"Jordi Rambla","orcid":"https://orcid.org/0000-0001-9091-257X"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210137962","display_name":"Centre for Genomic Regulation","ror":"https://ror.org/03wyzt892","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210132884","https://openalex.org/I4210137962","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jordi Rambla","raw_affiliation_strings":["Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology , Barcelona, Ciutat Vella 08003,","Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB , Barcelona 08003,","Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB, Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology , Barcelona, Ciutat Vella 08003,","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB , Barcelona 08003,","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Barcelona, Spain","institution_ids":["https://openalex.org/I4210137962"]},{"raw_affiliation_string":"Department of Medicine and Life Sciences, Universitat Pompeu Fabra, PRBB, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022616183","display_name":"Natalie A. Twine","orcid":"https://orcid.org/0000-0002-7351-864X"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Natalie A Twine","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088435862","display_name":"Yatish Jain","orcid":"https://orcid.org/0000-0002-0556-6586"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Yatish Jain","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney, NSW 2145,","institution_ids":["https://openalex.org/I4210141844"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Sydney","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5107979977","display_name":"Denis C. Bauer","orcid":"https://orcid.org/0000-0001-8033-9810"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]},{"id":"https://openalex.org/I4210101388","display_name":"Health Sciences and Nutrition","ror":"https://ror.org/0152bt112","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210101388","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210141844","display_name":"Australian e-Health Research Centre","ror":"https://ror.org/04ywhbc61","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801244131","https://openalex.org/I2801453606","https://openalex.org/I4210141844","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Denis C Bauer","raw_affiliation_strings":["Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","Department of Biomedical Informatics and Digital Health, School of Medical Sciences, University of Sydney , Sydney, NSW 2006,","Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","University of Sydney, School\u2014School of Medical Sciences Department of Biomedical Informatics and Digital Health, , Sydney,","Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia"],"affiliations":[{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation , Adelaide, SA 5000,","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I4210101388"]},{"raw_affiliation_string":"Department of Biomedical Informatics and Digital Health, School of Medical Sciences, University of Sydney , Sydney, NSW 2006,","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Applied BioSciences, Macquarie University , Macquarie Park, NSW 2109,","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"University of Sydney, School\u2014School of Medical Sciences Department of Biomedical Informatics and Digital Health, , Sydney,","institution_ids":["https://openalex.org/I129604602"]},{"raw_affiliation_string":"Macquarie University, Applied BioSciences, Faculty of Science and Engineering, Macquarie Park, Australia","institution_ids":["https://openalex.org/I99043593"]},{"raw_affiliation_string":"Australian e-Health Research Centre, Commonwealth Scientific and Industrial Research Organisation, Adelaide, Australia","institution_ids":["https://openalex.org/I4210141844","https://openalex.org/I1292875679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5039351950"],"corresponding_institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210101388","https://openalex.org/I4210141844"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04095104,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.921999990940094,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6680352687835693},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6464011669158936},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.6122996807098389},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.48913338780403137},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4878397285938263},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4338034391403198},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42460769414901733},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.41155216097831726},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.4053625464439392},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23547837138175964},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23278331756591797},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1752508580684662},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14996013045310974},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09859448671340942},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09856581687927246},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09606438875198364}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6680352687835693},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6464011669158936},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.6122996807098389},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.48913338780403137},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4878397285938263},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4338034391403198},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42460769414901733},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.41155216097831726},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.4053625464439392},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23547837138175964},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23278331756591797},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1752508580684662},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14996013045310974},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09859448671340942},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09856581687927246},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09606438875198364},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010300","descriptor_name":"Parkinson Disease","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39985504","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39985504","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/70381","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/70381","pdf_url":"https://repositori.upf.edu/bitstreams/58290111-9ec7-4c09-a4bb-b99dc616c703/download","source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:10711984","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11889448","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf079","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf079","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf079/62052449/btaf079.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320386","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407851917.pdf"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W2888291381","https://openalex.org/W2919288702","https://openalex.org/W3131274224","https://openalex.org/W3159176949","https://openalex.org/W4292210254","https://openalex.org/W4323310036","https://openalex.org/W4386741099","https://openalex.org/W4392361637","https://openalex.org/W4399562576"],"related_works":["https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2154046714","https://openalex.org/W2189613078","https://openalex.org/W2579659702","https://openalex.org/W2923661510","https://openalex.org/W1574055964","https://openalex.org/W1965329638","https://openalex.org/W2542318691","https://openalex.org/W3160708108"],"abstract_inverted_index":{"AskBeacon":[0],"is":[1],"available":[2],"at":[3],"https://github.com/aehrc/AskBeacon.":[4]},"counts_by_year":[],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
