{"id":"https://openalex.org/W4408313940","doi":"https://doi.org/10.1093/bioinformatics/btaf073","title":"TrAGEDy\u2014trajectory alignment of gene expression dynamics","display_name":"TrAGEDy\u2014trajectory alignment of gene expression dynamics","publication_year":2025,"publication_date":"2025-03-01","ids":{"openalex":"https://openalex.org/W4408313940","doi":"https://doi.org/10.1093/bioinformatics/btaf073","pmid":"https://pubmed.ncbi.nlm.nih.gov/40065693"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf073","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf073","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064123115","display_name":"Ross F Laidlaw","orcid":"https://orcid.org/0009-0006-9559-7218"},"institutions":[{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Ross F Laidlaw","raw_affiliation_strings":["Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","University of Glasgow Centre for Parasitology, , Glasgow,"],"affiliations":[{"raw_affiliation_string":"Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"University of Glasgow Centre for Parasitology, , Glasgow,","institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I7882870"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064180677","display_name":"Emma M. Briggs","orcid":"https://orcid.org/0000-0002-6740-8882"},"institutions":[{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4210129072","display_name":"Centre for Immunity, Infection and Evolution","ror":"https://ror.org/03qp5ww24","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210129072"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]},{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emma M Briggs","raw_affiliation_strings":["Biosciences Institute, Newcastle University , Newcastle upon Tyne, NE1 7RU,","Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","Institute for Immunology and Infection Research, University of Edinburgh , Edinburgh, EH8 9YL,","University of Glasgow Centre for Parasitology, , Glasgow,","Biosciences Institute, Newcastle University , Newcastle upon Tyne,","University of Edinburgh Institute for Immunology and Infection Research, , Edinburgh,"],"affiliations":[{"raw_affiliation_string":"Biosciences Institute, Newcastle University , Newcastle upon Tyne, NE1 7RU,","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Institute for Immunology and Infection Research, University of Edinburgh , Edinburgh, EH8 9YL,","institution_ids":["https://openalex.org/I98677209","https://openalex.org/I4210129072"]},{"raw_affiliation_string":"University of Glasgow Centre for Parasitology, , Glasgow,","institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I7882870"]},{"raw_affiliation_string":"Biosciences Institute, Newcastle University , Newcastle upon Tyne,","institution_ids":["https://openalex.org/I84884186"]},{"raw_affiliation_string":"University of Edinburgh Institute for Immunology and Infection Research, , Edinburgh,","institution_ids":["https://openalex.org/I4210129072","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005777264","display_name":"Keith R. Matthews","orcid":"https://orcid.org/0000-0003-0309-9184"},"institutions":[{"id":"https://openalex.org/I4210129072","display_name":"Centre for Immunity, Infection and Evolution","ror":"https://ror.org/03qp5ww24","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I4210129072"]},{"id":"https://openalex.org/I98677209","display_name":"University of Edinburgh","ror":"https://ror.org/01nrxwf90","country_code":"GB","type":"education","lineage":["https://openalex.org/I98677209"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Keith R Matthews","raw_affiliation_strings":["Institute for Immunology and Infection Research, University of Edinburgh , Edinburgh, EH8 9YL,","University of Edinburgh Institute for Immunology and Infection Research, , Edinburgh,"],"affiliations":[{"raw_affiliation_string":"Institute for Immunology and Infection Research, University of Edinburgh , Edinburgh, EH8 9YL,","institution_ids":["https://openalex.org/I98677209","https://openalex.org/I4210129072"]},{"raw_affiliation_string":"University of Edinburgh Institute for Immunology and Infection Research, , Edinburgh,","institution_ids":["https://openalex.org/I4210129072","https://openalex.org/I98677209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017550767","display_name":"Amir Madany Mamlouk","orcid":"https://orcid.org/0000-0001-9709-1620"},"institutions":[{"id":"https://openalex.org/I9341345","display_name":"University of L\u00fcbeck","ror":"https://ror.org/00t3r8h32","country_code":"DE","type":"education","lineage":["https://openalex.org/I9341345"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Amir Madany Mamlouk","raw_affiliation_strings":["Institute for Neuro- and Bioinformatics, University of L\u00fcbeck , L\u00fcbeck, 23562,","University of L\u00fcbeck Institute for Neuro- and Bioinformatics, , L\u00fcbeck,"],"affiliations":[{"raw_affiliation_string":"Institute for Neuro- and Bioinformatics, University of L\u00fcbeck , L\u00fcbeck, 23562,","institution_ids":["https://openalex.org/I9341345"]},{"raw_affiliation_string":"University of L\u00fcbeck Institute for Neuro- and Bioinformatics, , L\u00fcbeck,","institution_ids":["https://openalex.org/I9341345"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043965341","display_name":"Richard McCulloch","orcid":"https://orcid.org/0000-0001-5739-976X"},"institutions":[{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard McCulloch","raw_affiliation_strings":["Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","University of Glasgow Centre for Parasitology, , Glasgow,"],"affiliations":[{"raw_affiliation_string":"Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"University of Glasgow Centre for Parasitology, , Glasgow,","institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I7882870"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012004257","display_name":"Thomas D. Otto","orcid":"https://orcid.org/0000-0002-1246-7404"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210094430","display_name":"Wellcome Centre for Molecular Parasitology","ror":"https://ror.org/00m7w8s72","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210094430","https://openalex.org/I7882870","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I7882870","display_name":"University of Glasgow","ror":"https://ror.org/00vtgdb53","country_code":"GB","type":"education","lineage":["https://openalex.org/I7882870"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Thomas D Otto","raw_affiliation_strings":["Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","Laboratory of Pathogens and Host Immunity, Universite de Montpellier , Montpellier, 34090,","Laboratory of Pathogens and Host Immunity, Universite de Montpellier , Montpellier,","University of Glasgow Centre for Parasitology, , Glasgow,"],"affiliations":[{"raw_affiliation_string":"Centre for Parasitology, University of Glasgow , Glasgow, G12 8QQ,","institution_ids":["https://openalex.org/I7882870"]},{"raw_affiliation_string":"Laboratory of Pathogens and Host Immunity, Universite de Montpellier , Montpellier, 34090,","institution_ids":["https://openalex.org/I19894307"]},{"raw_affiliation_string":"Laboratory of Pathogens and Host Immunity, Universite de Montpellier , Montpellier,","institution_ids":["https://openalex.org/I19894307"]},{"raw_affiliation_string":"University of Glasgow Centre for Parasitology, , Glasgow,","institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I7882870"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5064123115"],"corresponding_institution_ids":["https://openalex.org/I4210094430","https://openalex.org/I7882870"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.4649,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79883478,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"41","issue":"3","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tragedy","display_name":"Tragedy (event)","score":0.7659120559692383},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.6562513113021851},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6209924817085266},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4273432791233063},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40043699741363525},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34091106057167053},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.31420424580574036}],"concepts":[{"id":"https://openalex.org/C2780027720","wikidata":"https://www.wikidata.org/wiki/Q7832608","display_name":"Tragedy (event)","level":2,"score":0.7659120559692383},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.6562513113021851},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6209924817085266},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4273432791233063},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40043699741363525},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34091106057167053},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31420424580574036},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014346","descriptor_name":"Trypanosoma brucei brucei","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/bioinformatics/btaf073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf073","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:40065693","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40065693","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pure.ed.ac.uk:openaire/a1c08546-0b94-4f7e-bdbd-8d8d532ef89a","is_oa":true,"landing_page_url":"https://www.research.ed.ac.uk/en/publications/a1c08546-0b94-4f7e-bdbd-8d8d532ef89a","pdf_url":null,"source":{"id":"https://openalex.org/S4406922455","display_name":"Edinburgh Research Explorer","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Laidlaw, R F, Briggs, E M, Matthews, K R, Madany Mamlouk, A, McCulloch, R & Otto, T D 2025, 'TrAGEDy\u2014trajectory alignment of gene expression dynamics', Bioinformatics, vol. 41, no. 3, btaf073. https://doi.org/10.1093/bioinformatics/btaf073","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:eprints.gla.ac.uk:347267","is_oa":true,"landing_page_url":"http://eprints.gla.ac.uk/view/author/61540.html>,","pdf_url":null,"source":{"id":"https://openalex.org/S4210235606","display_name":"ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)","issn_l":"2622-8912","issn":["2622-8912","2622-8920"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:europepmc.org:10724763","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11908647","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf073","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf073","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3804957094","display_name":null,"funder_award_id":"104111/Z/14/ZR","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G3817770730","display_name":"DTP Bid Led by University of Edinburgh","funder_award_id":"MR/N013166/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6170403351","display_name":null,"funder_award_id":"218648/Z/19/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1984883254","https://openalex.org/W2140489687","https://openalex.org/W2582033455","https://openalex.org/W2789661952","https://openalex.org/W2916020270","https://openalex.org/W2927507212","https://openalex.org/W2947839897","https://openalex.org/W2950372712","https://openalex.org/W2951799803","https://openalex.org/W2991354527","https://openalex.org/W2993894543","https://openalex.org/W3009370296","https://openalex.org/W3013348049","https://openalex.org/W3014807564","https://openalex.org/W3015671642","https://openalex.org/W3028149335","https://openalex.org/W3029730770","https://openalex.org/W3159652022","https://openalex.org/W3174608384","https://openalex.org/W3197560622","https://openalex.org/W4280509170","https://openalex.org/W4378212544","https://openalex.org/W4385945347","https://openalex.org/W6851053648"],"related_works":["https://openalex.org/W2361496929","https://openalex.org/W2393999527","https://openalex.org/W2366433111","https://openalex.org/W621291262","https://openalex.org/W2361753970","https://openalex.org/W2391748847","https://openalex.org/W2384232886","https://openalex.org/W2360971512","https://openalex.org/W2363965463","https://openalex.org/W1601874835"],"abstract_inverted_index":{"TrAGEDy":[0],"is":[1],"freely":[2],"available":[3],"at":[4],"https://github.com/No2Ross/TrAGEDy,":[5],"and":[6],"implemented":[7],"in":[8],"R.":[9]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}
