{"id":"https://openalex.org/W4407360649","doi":"https://doi.org/10.1093/bioinformatics/btaf069","title":"A conditional denoising VAE-based framework for antimicrobial peptides generation with preserving desirable properties","display_name":"A conditional denoising VAE-based framework for antimicrobial peptides generation with preserving desirable properties","publication_year":2025,"publication_date":"2025-02-01","ids":{"openalex":"https://openalex.org/W4407360649","doi":"https://doi.org/10.1093/bioinformatics/btaf069","pmid":"https://pubmed.ncbi.nlm.nih.gov/39932977"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf069","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf069/61850682/btaf069.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf069/61850682/btaf069.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079,","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079,","School of Computer, Central China Normal University , Wuhan, Hubei 430079,","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, Hubei 430079, PR China","National Language Resources Monitoring & Research Center for network Media, Central China Normal University, Wuhan, Hubei 430079, PR China","School of Computer, Central China Normal University, Wuhan, Hubei 430079, PR China"],"raw_orcid":"https://orcid.org/0000-0001-8552-6084","affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079,","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University , Wuhan, Hubei 430079,","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University , Wuhan, Hubei 430079,","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, Hubei 430079, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for network Media, Central China Normal University, Wuhan, Hubei 430079, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113195073","display_name":"Keyuan Hou","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaijieyi Hou","raw_affiliation_strings":["Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079,","Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, Hubei 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University , Wuhan, Hubei 430079,","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, Hubei 430079, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016275823","display_name":"Yi\u2010Ting Shen","orcid":"https://orcid.org/0000-0002-1167-5535"},"institutions":[{"id":"https://openalex.org/I74525822","display_name":"Hubei University of Technology","ror":"https://ror.org/02d3fj342","country_code":"CN","type":"education","lineage":["https://openalex.org/I74525822"]},{"id":"https://openalex.org/I91125648","display_name":"Wuhan Institute of Technology","ror":"https://ror.org/04jcykh16","country_code":"CN","type":"education","lineage":["https://openalex.org/I91125648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiting Shen","raw_affiliation_strings":["Detroit Green Technology Institute, Hubei University of Technology , Wuhan, Hubei 430079,","Detroit Green Technology Institute, Hubei University of Technology, WuHan, Hubei 430079, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Detroit Green Technology Institute, Hubei University of Technology , Wuhan, Hubei 430079,","institution_ids":["https://openalex.org/I91125648","https://openalex.org/I74525822"]},{"raw_affiliation_string":"Detroit Green Technology Institute, Hubei University of Technology, WuHan, Hubei 430079, PR China","institution_ids":["https://openalex.org/I74525822"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101569679","display_name":"Xiaohua Hu","orcid":"https://orcid.org/0000-0002-4777-3022"},"institutions":[{"id":"https://openalex.org/I72816309","display_name":"Drexel University","ror":"https://ror.org/04bdffz58","country_code":"US","type":"education","lineage":["https://openalex.org/I72816309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaohua Hu","raw_affiliation_strings":["College of Computing & Informatics, Drexel University , Philadelphia, PA 19104,","College of Computing & Informatics, Drexel University, Philadelphia, PA 19104, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computing & Informatics, Drexel University , Philadelphia, PA 19104,","institution_ids":["https://openalex.org/I72816309"]},{"raw_affiliation_string":"College of Computing & Informatics, Drexel University, Philadelphia, PA 19104, United States","institution_ids":["https://openalex.org/I72816309"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I40963666"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":9.0616,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.98276875,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"41","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.008999999612569809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.001500000013038516,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7152589559555054},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"Antimicrobial peptides","score":0.5363567471504211},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4908612370491028},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.45046892762184143},{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.19699904322624207},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14900782704353333}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7152589559555054},{"id":"https://openalex.org/C540938839","wikidata":"https://www.wikidata.org/wiki/Q1201508","display_name":"Antimicrobial peptides","level":3,"score":0.5363567471504211},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4908612370491028},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.45046892762184143},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.19699904322624207},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14900782704353333},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000089882","descriptor_name":"Antimicrobial Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf069","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf069/61850682/btaf069.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39932977","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39932977","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11850229","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11850229","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11850229/pdf/btaf069.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf069","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf069","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf069/61850682/btaf069.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1307575636","display_name":"\u9762\u5411\u8111\u75be\u75c5\u7684\u4eba\u4f53\u80a0\u9053\u5fae\u751f\u7269\u7ec4\u5b66\u6570\u636e\u6316\u6398\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61932008","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2235372276","display_name":null,"funder_award_id":"62472192","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G235156935","display_name":null,"funder_award_id":"62372205","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4407360649.pdf"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W2167332415","https://openalex.org/W2175270296","https://openalex.org/W2588467130","https://openalex.org/W2784920021","https://openalex.org/W2791848964","https://openalex.org/W2800881031","https://openalex.org/W2964121744","https://openalex.org/W2993030000","https://openalex.org/W3015438624","https://openalex.org/W3040996852","https://openalex.org/W3080137602","https://openalex.org/W3081615418","https://openalex.org/W3126516421","https://openalex.org/W3154086429","https://openalex.org/W3177828909","https://openalex.org/W3188372451","https://openalex.org/W3216340885","https://openalex.org/W4224318918","https://openalex.org/W4224997444","https://openalex.org/W4297229820","https://openalex.org/W4313401565","https://openalex.org/W4319310987","https://openalex.org/W4321124255","https://openalex.org/W4322718303","https://openalex.org/W4324344300","https://openalex.org/W4365459335","https://openalex.org/W4385766067","https://openalex.org/W4388492286","https://openalex.org/W4399356471","https://openalex.org/W4400026633","https://openalex.org/W4400864148","https://openalex.org/W4403253158","https://openalex.org/W6638836233","https://openalex.org/W6680067488","https://openalex.org/W6800478302"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"MOTIVATION:":[0],"The":[1,93,191],"widespread":[2],"use":[3],"of":[4,11,24,49],"antibiotics":[5],"has":[6],"led":[7],"to":[8,32,41,114,144,182],"the":[9,22,46,54,136,160,183],"emergence":[10],"resistant":[12],"pathogens.":[13],"Antimicrobial":[14],"peptides":[15],"(AMPs)":[16],"combat":[17],"bacterial":[18],"infections":[19],"by":[20,86],"disrupting":[21],"integrity":[23],"cell":[25],"membranes,":[26],"making":[27],"it":[28,143],"challenging":[29],"for":[30,90,174],"bacteria":[31],"develop":[33],"resistance.":[34,44,187],"Consequently,":[35],"AMPs":[36,51,165],"offer":[37],"a":[38,80,111,139,171],"promising":[39],"solution":[40],"addressing":[42],"antibiotic":[43,186],"However,":[45],"limited":[47,153],"availability":[48],"natural":[50],"cannot":[52],"meet":[53],"growing":[55],"demand.":[56],"While":[57],"deep":[58],"learning":[59],"technologies":[60],"have":[61],"advanced":[62],"AMP":[63,91,175],"generation,":[64],"conventional":[65],"models":[66],"often":[67],"lack":[68],"stability":[69],"and":[70,105,127,177,193,202],"may":[71],"introduce":[72],"unforeseen":[73],"side":[74],"effects.":[75],"RESULTS:":[76],"This":[77],"study":[78],"presents":[79],"novel":[81],"denoising":[82,140],"VAE-based":[83],"model":[84,94,133,137,162],"guided":[85],"desirable":[87,167],"physicochemical":[88],"properties":[89],"generation.":[92],"integrates":[95],"key":[96],"features":[97],"(e.g.":[98],"molecular":[99],"weight,":[100],"isoelectric":[101],"point,":[102],"hydrophobicity,":[103],"etc.),":[104],"employs":[106],"position":[107],"encoding":[108],"along":[109],"with":[110,166],"Transformer":[112],"architecture":[113],"enhance":[115],"generation":[116],"accuracy.":[117],"A":[118],"customized":[119],"loss":[120,130],"function,":[121],"combining":[122],"reconstruction":[123],"loss,":[124],"KL":[125],"divergence,":[126],"property":[128],"preserving":[129],"ensure":[131],"effective":[132],"training.":[134],"Additionally,":[135],"incorporates":[138],"mechanism,":[141],"enabling":[142],"learn":[145],"from":[146],"perturbed":[147],"inputs,":[148],"thus":[149],"maintaining":[150],"performance":[151],"under":[152],"training":[154],"data.":[155],"Experimental":[156],"results":[157],"demonstrate":[158],"that":[159],"proposed":[161],"can":[163],"generate":[164],"functional":[168],"properties,":[169],"offering":[170],"viable":[172],"approach":[173],"design":[176],"analysis,":[178],"which":[179],"ultimately":[180],"contributes":[181],"fight":[184],"against":[185],"AVAILABILITY":[188],"AND":[189],"IMPLEMENTATION:":[190],"data":[192],"source":[194],"codes":[195],"are":[196],"available":[197],"both":[198],"in":[199],"GitHub":[200],"(https://github.com/David-WZhao/PPGC-DVAE)":[201],"Zenodo":[203],"(DOI":[204],"10.5281/zenodo.14730711).":[205]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":6}],"updated_date":"2026-07-18T07:39:51.176621","created_date":"2025-10-10T00:00:00"}
