{"id":"https://openalex.org/W4406887026","doi":"https://doi.org/10.1093/bioinformatics/btaf040","title":"Robustly interrogating machine learning-based scoring functions: what are they learning?","display_name":"Robustly interrogating machine learning-based scoring functions: what are they learning?","publication_year":2025,"publication_date":"2025-01-24","ids":{"openalex":"https://openalex.org/W4406887026","doi":"https://doi.org/10.1093/bioinformatics/btaf040","pmid":"https://pubmed.ncbi.nlm.nih.gov/39874452"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/bioinformatics/btaf040","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011466340","display_name":"G. J. DURANT","orcid":"https://orcid.org/0009-0007-3249-3793"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Guy Durant","raw_affiliation_strings":["Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom"],"raw_orcid":"https://orcid.org/0009-0007-3249-3793","affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016484730","display_name":"Fergus Boyles","orcid":"https://orcid.org/0000-0002-4185-1229"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Fergus Boyles","raw_affiliation_strings":["Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-4185-1229","affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059606387","display_name":"Kristian Birchall","orcid":"https://orcid.org/0000-0001-9992-2555"},"institutions":[{"id":"https://openalex.org/I109541847","display_name":"LifeArc","ror":"https://ror.org/01dqb0q37","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I109541847"]},{"id":"https://openalex.org/I4210087734","display_name":"Stevenage Bioscience Catalyst","ror":"https://ror.org/003dca267","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210087734"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kristian Birchall","raw_affiliation_strings":["LifeArc , Stevenage SG1 2FX,","LifeArc, Stevenage, SG1 2FX, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-9992-2555","affiliations":[{"raw_affiliation_string":"LifeArc , Stevenage SG1 2FX,","institution_ids":["https://openalex.org/I109541847","https://openalex.org/I4210087734"]},{"raw_affiliation_string":"LifeArc, Stevenage, SG1 2FX, United Kingdom","institution_ids":["https://openalex.org/I109541847"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012850513","display_name":"Brian D. Marsden","orcid":"https://orcid.org/0000-0002-1937-4091"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Brian Marsden","raw_affiliation_strings":["Nuffield Department of Medicine, University of Oxford , Oxford OX3 7BN,","Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-1937-4091","affiliations":[{"raw_affiliation_string":"Nuffield Department of Medicine, University of Oxford , Oxford OX3 7BN,","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Nuffield Department of Medicine, University of Oxford, Oxford, OX3 7BN, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015572211","display_name":"Charlotte M. Deane","orcid":"https://orcid.org/0000-0003-1388-2252"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Charlotte M Deane","raw_affiliation_strings":["Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0003-1388-2252","affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles' , Oxford OX1 3LB,","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, St Giles', Oxford, OX1 3LB, United Kingdom","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015572211"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":17.9643,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.99073813,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"41","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.4449000060558319,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12026","display_name":"Explainable Artificial Intelligence (XAI)","score":0.4449000060558319,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12535","display_name":"Machine Learning and Data Classification","score":0.21140000224113464,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11689","display_name":"Adversarial Robustness in Machine Learning","score":0.050200000405311584,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7817033529281616},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.7244539260864258},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7214182615280151},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6374119520187378},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5865122079849243},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5578290820121765},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.47293710708618164},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32684001326560974},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0633787214756012}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7817033529281616},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.7244539260864258},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7214182615280151},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6374119520187378},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5865122079849243},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5578290820121765},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.47293710708618164},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32684001326560974},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0633787214756012},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btaf040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39874452","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39874452","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11821266","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11821266","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11821266/pdf/btaf040.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf040","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf040","pdf_url":null,"source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G4886476515","display_name":null,"funder_award_id":"EP/S024093","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6908532722","display_name":"EPSRC CDT in Sustainable Approaches to Biomedical Science: Responsible and Reproducible Research - SABS:R^3","funder_award_id":"EP/S024093/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W1964958542","https://openalex.org/W1974324284","https://openalex.org/W1984021058","https://openalex.org/W1985588649","https://openalex.org/W1987275960","https://openalex.org/W1992441011","https://openalex.org/W1993285168","https://openalex.org/W1998519205","https://openalex.org/W2003356525","https://openalex.org/W2020372058","https://openalex.org/W2022998385","https://openalex.org/W2028629022","https://openalex.org/W2040496005","https://openalex.org/W2052030759","https://openalex.org/W2054954101","https://openalex.org/W2058686370","https://openalex.org/W2075020622","https://openalex.org/W2088970363","https://openalex.org/W2092285329","https://openalex.org/W2105668062","https://openalex.org/W2114162221","https://openalex.org/W2134967712","https://openalex.org/W2147526198","https://openalex.org/W2148512505","https://openalex.org/W2169678694","https://openalex.org/W2244785476","https://openalex.org/W2346710580","https://openalex.org/W2550887636","https://openalex.org/W2781821160","https://openalex.org/W2784213390","https://openalex.org/W2803094965","https://openalex.org/W2902812092","https://openalex.org/W2918239264","https://openalex.org/W2952635193","https://openalex.org/W2980234582","https://openalex.org/W3009499476","https://openalex.org/W3080588469","https://openalex.org/W3082411326","https://openalex.org/W3126502429","https://openalex.org/W3168430821","https://openalex.org/W3194618792","https://openalex.org/W3206116522","https://openalex.org/W3209909976","https://openalex.org/W4224230705","https://openalex.org/W4281381643","https://openalex.org/W4283013935","https://openalex.org/W4294719209","https://openalex.org/W4306986475","https://openalex.org/W4313367649"],"related_works":["https://openalex.org/W2383111961","https://openalex.org/W2365952365","https://openalex.org/W2352448290","https://openalex.org/W2380820513","https://openalex.org/W2913146933","https://openalex.org/W2372385138","https://openalex.org/W4296359239","https://openalex.org/W2101155126","https://openalex.org/W2043093291","https://openalex.org/W92963860"],"abstract_inverted_index":{"MOTIVATION:":[0],"Machine":[1],"learning-based":[2],"scoring":[3],"functions":[4],"(MLBSFs)":[5],"have":[6],"been":[7],"found":[8,84],"to":[9,19,26,67,93,117],"exhibit":[10],"inconsistent":[11],"performance":[12,53,121],"on":[13,78,129],"different":[14],"benchmarks":[15],"and":[16,65,110,122],"be":[17],"prone":[18],"learning":[20],"dataset":[21,76,106,127],"bias.":[22],"For":[23],"the":[24,52,124],"field":[25],"develop":[27],"MLBSFs":[28,60,95],"that":[29,72,85],"learn":[30,75,105],"a":[31,36,55,79],"generalizable":[32],"understanding":[33,39],"of":[34,40,54,58,81,126],"physics,":[35],"more":[37],"rigorous":[38],"how":[41],"they":[42],"perform":[43],"is":[44],"required.":[45],"RESULTS:":[46],"In":[47],"this":[48],"work,":[49],"we":[50],"compared":[51],"diverse":[56],"set":[57],"popular":[59],"(RFScore,":[61],"SIGN,":[62],"OnionNet-2,":[63],"Pafnucy,":[64],"PointVS)":[66],"our":[68],"proposed":[69,99],"baseline":[70,87],"models":[71,88,103],"can":[73],"only":[74,104],"biases":[77,128],"range":[80],"benchmarks.":[82],"We":[83],"these":[86,94,102],"were":[89],"competitive":[90],"in":[91,96],"accuracy":[92],"almost":[97],"all":[98],"benchmarks,":[100],"indicating":[101],"biases.":[107],"Our":[108],"tests":[109],"provided":[111],"platform,":[112],"ToolBoxSF,":[113],"will":[114],"enable":[115],"researchers":[116],"robustly":[118],"interrogate":[119],"MLBSF":[120],"determine":[123],"effect":[125],"their":[130],"predictions.":[131],"AVAILABILITY":[132],"AND":[133],"IMPLEMENTATION:":[134],"https://github.com/guydurant/toolboxsf.":[135]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":7}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}
