{"id":"https://openalex.org/W4406292098","doi":"https://doi.org/10.1093/bioinformatics/btaf019","title":"DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning","display_name":"DDGemb: predicting protein stability change upon single- and multi-point variations with embeddings and deep learning","publication_year":2024,"publication_date":"2024-12-26","ids":{"openalex":"https://openalex.org/W4406292098","doi":"https://doi.org/10.1093/bioinformatics/btaf019","pmid":"https://pubmed.ncbi.nlm.nih.gov/39799516"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf019","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf019/61416290/btaf019.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf019/61416290/btaf019.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069439283","display_name":"Castrense Savojardo","orcid":"https://orcid.org/0000-0002-7359-0633"},"institutions":[{"id":"https://openalex.org/I4210097606","display_name":"GNA University","ror":"https://ror.org/00cy7e479","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097606"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IN","IT"],"is_corresponding":true,"raw_author_name":"Castrense Savojardo","raw_affiliation_strings":["Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","Biocomputing Group, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","institution_ids":["https://openalex.org/I9360294","https://openalex.org/I4210097606"]},{"raw_affiliation_string":"Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Biocomputing Group, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085360324","display_name":"Matteo Manfredi","orcid":"https://orcid.org/0000-0001-5479-1723"},"institutions":[{"id":"https://openalex.org/I4210097606","display_name":"GNA University","ror":"https://ror.org/00cy7e479","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097606"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IN","IT"],"is_corresponding":false,"raw_author_name":"Matteo Manfredi","raw_affiliation_strings":["Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","Biocomputing Group, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","institution_ids":["https://openalex.org/I9360294","https://openalex.org/I4210097606"]},{"raw_affiliation_string":"Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Biocomputing Group, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044479288","display_name":"Pier Luigi Martelli","orcid":"https://orcid.org/0000-0002-0274-5669"},"institutions":[{"id":"https://openalex.org/I4210097606","display_name":"GNA University","ror":"https://ror.org/00cy7e479","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097606"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IN","IT"],"is_corresponding":false,"raw_author_name":"Pier Luigi Martelli","raw_affiliation_strings":["Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","Biocomputing Group, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","institution_ids":["https://openalex.org/I9360294","https://openalex.org/I4210097606"]},{"raw_affiliation_string":"Dept. of Pharmacy and Biotechnology, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Biocomputing Group, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[{"id":"https://openalex.org/I4210097606","display_name":"GNA University","ror":"https://ror.org/00cy7e479","country_code":"IN","type":"education","lineage":["https://openalex.org/I4210097606"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IN","IT"],"is_corresponding":false,"raw_author_name":"Rita Casadio","raw_affiliation_strings":["Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","The Alma Climate Institute, Interdepartmental Center, University of Bologna , Bologna, 40100,","the Alma Climate Institute, University of Bologna, Italy","Biocomputing Group, University of Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna , Via San Giacomo 9/2 , Bologna, 40126,","institution_ids":["https://openalex.org/I9360294","https://openalex.org/I4210097606"]},{"raw_affiliation_string":"The Alma Climate Institute, Interdepartmental Center, University of Bologna , Bologna, 40100,","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"the Alma Climate Institute, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Biocomputing Group, University of Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5069439283"],"corresponding_institution_ids":["https://openalex.org/I4210097606","https://openalex.org/I9360294"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":2.7304,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.91044682,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"41","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7806058526039124},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6085481643676758},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5859817862510681},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5318315625190735},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5015978813171387},{"id":"https://openalex.org/keywords/single-point","display_name":"Single point","score":0.4827515482902527},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46113789081573486},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4487631320953369},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40662887692451477},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3345554769039154},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1004471480846405}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7806058526039124},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6085481643676758},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5859817862510681},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5318315625190735},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5015978813171387},{"id":"https://openalex.org/C2992444157","wikidata":"https://www.wikidata.org/wiki/Q775079","display_name":"Single point","level":3,"score":0.4827515482902527},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46113789081573486},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4487631320953369},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40662887692451477},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3345554769039154},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1004471480846405},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C2778800418","wikidata":"https://www.wikidata.org/wiki/Q631910","display_name":"TRIZ","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055550","descriptor_name":"Protein Stability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf019","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf019/61416290/btaf019.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39799516","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39799516","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11783275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11783275","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11783275/pdf/btaf019.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:cris.unibo.it:11585/1007911","is_oa":true,"landing_page_url":"https://hdl.handle.net/11585/1007911","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf019","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf019","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf019/61416290/btaf019.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1016895160","display_name":null,"funder_award_id":"PNRR-M4C2","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2020622295","display_name":null,"funder_award_id":"Big Data","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2233891588","display_name":null,"funder_award_id":"PE_0000001","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3514550006","display_name":null,"funder_award_id":"Centre","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6302051567","display_name":null,"funder_award_id":"CN_00000013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6621254219","display_name":null,"funder_award_id":"CUP J33C22002920006","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7665629956","display_name":null,"funder_award_id":"PE_00000019","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G889028276","display_name":null,"funder_award_id":"J33C22002920006","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406292098.pdf","grobid_xml":"https://content.openalex.org/works/W4406292098.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W2023490488","https://openalex.org/W2031553026","https://openalex.org/W2041476324","https://openalex.org/W2064488723","https://openalex.org/W2103459989","https://openalex.org/W2104418738","https://openalex.org/W2121519777","https://openalex.org/W2134488721","https://openalex.org/W2136513422","https://openalex.org/W2149580316","https://openalex.org/W2151529283","https://openalex.org/W2153457180","https://openalex.org/W2324374958","https://openalex.org/W2335773464","https://openalex.org/W2794503008","https://openalex.org/W2801491392","https://openalex.org/W2900674118","https://openalex.org/W2916078022","https://openalex.org/W2953906682","https://openalex.org/W3008907659","https://openalex.org/W3083008290","https://openalex.org/W3093556707","https://openalex.org/W3094314446","https://openalex.org/W3109312535","https://openalex.org/W3117622225","https://openalex.org/W3119533938","https://openalex.org/W3136963718","https://openalex.org/W3146944767","https://openalex.org/W3171481040","https://openalex.org/W4206007286","https://openalex.org/W4211001953","https://openalex.org/W4296032638","https://openalex.org/W4313339887","https://openalex.org/W4327550249","https://openalex.org/W4360617723","https://openalex.org/W4385393084","https://openalex.org/W4388486442","https://openalex.org/W4391308485","https://openalex.org/W4391849830"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175","https://openalex.org/W4230315250"],"abstract_inverted_index":{"DDGemb":[0],"is":[1],"available":[2,14],"as":[3],"web":[4],"server":[5],"at":[6,15],"https://ddgemb.biocomp.unibo.it.":[7],"Datasets":[8],"used":[9],"in":[10],"this":[11],"study":[12],"are":[13],"https://ddgemb.biocomp.unibo.it/datasets.":[16]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":8}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
