{"id":"https://openalex.org/W4406281227","doi":"https://doi.org/10.1093/bioinformatics/btaf012","title":"<tt>tagtango</tt>: an application to compare single-cell annotations","display_name":"<tt>tagtango</tt>: an application to compare single-cell annotations","publication_year":2025,"publication_date":"2025-01-11","ids":{"openalex":"https://openalex.org/W4406281227","doi":"https://doi.org/10.1093/bioinformatics/btaf012","pmid":"https://pubmed.ncbi.nlm.nih.gov/39798134"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf012","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf012/61415027/btaf012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf012/61415027/btaf012.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008695370","display_name":"Bernat Bramon Mora","orcid":"https://orcid.org/0000-0003-4735-567X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Bernat Bramon Mora","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","Biomedical Data Science Center, University of Lausanne , Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015,","Swiss Institute of Bioinformatics, Vaud 1015, Country","University of Lausanne, Vaud 1015, Switzerland","Swiss Institute of Bioinformatics , Vaud 1015, Country","Lausanne University Hospital, Vaud 1005, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Biomedical Data Science Center, University of Lausanne , Vaud 1015,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Lausanne, Vaud 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Lausanne University Hospital, Vaud 1005, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085312927","display_name":"Helen Lindsay","orcid":"https://orcid.org/0000-0001-8614-1661"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Helen Lindsay","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","Biomedical Data Science Center, University of Lausanne , Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015, Country","University of Lausanne, Vaud 1015, Switzerland","Swiss Institute of Bioinformatics, Vaud 1015, Country","Lausanne University Hospital, Vaud 1005, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Biomedical Data Science Center, University of Lausanne , Vaud 1015,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Lausanne, Vaud 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Lausanne University Hospital, Vaud 1005, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010510051","display_name":"Antonin Thi\u00e9baut","orcid":"https://orcid.org/0000-0002-7587-5587"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Antonin Thi\u00e9baut","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","Biomedical Data Science Center, University of Lausanne , Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015,","Swiss Institute of Bioinformatics, Vaud 1015, Country","University of Lausanne, Vaud 1015, Switzerland","Swiss Institute of Bioinformatics , Vaud 1015, Country","Lausanne University Hospital, Vaud 1005, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Biomedical Data Science Center, University of Lausanne , Vaud 1015,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Lausanne, Vaud 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Lausanne University Hospital, Vaud 1005, Switzerland","institution_ids":["https://openalex.org/I97565354"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111891809","display_name":"Kenneth Stuart","orcid":null},"institutions":[{"id":"https://openalex.org/I1295499534","display_name":"Seattle Children's Hospital","ror":"https://ror.org/01njes783","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1295499534"]},{"id":"https://openalex.org/I1330732676","display_name":"Infectious Disease Research Institute","ror":"https://ror.org/03y4myd35","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1330732676"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth D Stuart","raw_affiliation_strings":["Center for Global Infectious Disease Research, Seattle Children\u2019s Hospital , WA 98105,","Seattle Children's Hospital, WA 98105, United States"],"affiliations":[{"raw_affiliation_string":"Center for Global Infectious Disease Research, Seattle Children\u2019s Hospital , WA 98105,","institution_ids":["https://openalex.org/I1330732676"]},{"raw_affiliation_string":"Seattle Children's Hospital, WA 98105, United States","institution_ids":["https://openalex.org/I1295499534"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005741024","display_name":"Rapha\u00ebl Gottardo","orcid":"https://orcid.org/0000-0002-3867-0232"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Raphael Gottardo","raw_affiliation_strings":["Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","Biomedical Data Science Center, University of Lausanne , Vaud 1015,","School of Life Sciences, EPFL - Swiss Federal Technology Institute of Lausanne , Lausanne, Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015,","Swiss Institute of Bioinformatics , Vaud 1015, Country","University of Lausanne, Vaud 1015, Switzerland","Lausanne University Hospital, Vaud 1005, Switzerland","Swiss Institute of Bioinformatics, Vaud 1015, Country"],"affiliations":[{"raw_affiliation_string":"Biomedical Data Science Center, Lausanne University Hospital , Vaud 1005,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Biomedical Data Science Center, University of Lausanne , Vaud 1015,","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"School of Life Sciences, EPFL - Swiss Federal Technology Institute of Lausanne , Lausanne, Vaud 1015,","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015,","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics , Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"University of Lausanne, Vaud 1015, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Lausanne University Hospital, Vaud 1005, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Vaud 1015, Country","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008695370"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00467915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"2","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11020","display_name":"Immune Cell Function and Interaction","score":0.9656999707221985,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.964900016784668,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6270390152931213},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3852558434009552},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23170998692512512}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6270390152931213},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3852558434009552},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23170998692512512}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/bioinformatics/btaf012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf012","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf012/61415027/btaf012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39798134","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39798134","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:infoscience.epfl.ch:20.500.14299/250489","is_oa":true,"landing_page_url":"https://infoscience.epfl.ch/handle/20.500.14299/250489","pdf_url":"https://infoscience.epfl.ch/bitstreams/cef11ef8-e742-4c7d-b1dc-fdc1565d46e8/download","source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"research article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11814489","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11814489","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11814489/pdf/btaf012.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:serval.unil.ch:BIB_DEA93D296091","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_DEA93D296091","pdf_url":"https://iris.unil.ch/bitstreams/571c9ec5-cc25-41e1-b4a0-0c91ce013c44/download","source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, vol. 41, no. 2","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:iris.unil.ch:iris/239620","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/239620","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf012","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf012","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf012/61415027/btaf012.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1828171283","display_name":null,"funder_award_id":"0000000","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6539668705","display_name":null,"funder_award_id":"U19AI128914","funder_id":"https://openalex.org/F4320315474","funder_display_name":"Chan Zuckerberg Initiative"},{"id":"https://openalex.org/G665694093","display_name":null,"funder_award_id":"DI-0000000345","funder_id":"https://openalex.org/F4320315474","funder_display_name":"Chan Zuckerberg Initiative"},{"id":"https://openalex.org/G8209219023","display_name":null,"funder_award_id":"U19AI128914","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406281227.pdf","grobid_xml":"https://content.openalex.org/works/W4406281227.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W2160697532","https://openalex.org/W2164575308","https://openalex.org/W2190545194","https://openalex.org/W2343956310","https://openalex.org/W2471536144","https://openalex.org/W2739492614","https://openalex.org/W2805619986","https://openalex.org/W2885781875","https://openalex.org/W2889236955","https://openalex.org/W2900411771","https://openalex.org/W2907783748","https://openalex.org/W2946801856","https://openalex.org/W2951158909","https://openalex.org/W2951890476","https://openalex.org/W2951914955","https://openalex.org/W2952076809","https://openalex.org/W2989807288","https://openalex.org/W2995410603","https://openalex.org/W3015184839","https://openalex.org/W3043125089","https://openalex.org/W3164692211","https://openalex.org/W4251287806","https://openalex.org/W4254687493","https://openalex.org/W4307134368","https://openalex.org/W4392167979","https://openalex.org/W4400431132"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"tagtango":[0],"is":[1],"freely":[2],"available":[3],"at":[4,17],"https://github.com/bernibra/tagtango":[5],"as":[6,10,12],"an":[7,13],"R":[8],"package":[9],"well":[11],"online":[14],"web":[15],"service":[16],"https://tagtango.unil.ch.":[18]},"counts_by_year":[],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-01-11T00:00:00"}
