{"id":"https://openalex.org/W4406170344","doi":"https://doi.org/10.1093/bioinformatics/btaf004","title":"RNA-TorsionBERT: leveraging language models for RNA 3D torsion angles prediction","display_name":"RNA-TorsionBERT: leveraging language models for RNA 3D torsion angles prediction","publication_year":2024,"publication_date":"2024-12-26","ids":{"openalex":"https://openalex.org/W4406170344","doi":"https://doi.org/10.1093/bioinformatics/btaf004","pmid":"https://pubmed.ncbi.nlm.nih.gov/39775709"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf004","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf004/61381586/btaf004.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf004/61381586/btaf004.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101658860","display_name":"Cl\u00e9ment Bernard","orcid":"https://orcid.org/0009-0003-0117-9823"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I4387152856","display_name":"Laboratoire Interdisciplinaire des Sciences du Num\u00e9rique","ror":"https://ror.org/00rd81916","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment Bernard","raw_affiliation_strings":["LISN\u2014CNRS/Universit\u00e9 Paris-Saclay , Orsay 91400,","Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,","STL - Sciences et Technologies des Langues - LISN (France)"],"raw_orcid":"https://orcid.org/0009-0003-0117-9823","affiliations":[{"raw_affiliation_string":"LISN\u2014CNRS/Universit\u00e9 Paris-Saclay , Orsay 91400,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]},{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]},{"raw_affiliation_string":"STL - Sciences et Technologies des Langues - LISN (France)","institution_ids":["https://openalex.org/I4387152856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055433325","display_name":"Guillaume Postic","orcid":"https://orcid.org/0000-0002-0380-0092"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Postic","raw_affiliation_strings":["Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,"],"raw_orcid":"https://orcid.org/0000-0002-0380-0092","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000557257","display_name":"Sahar Ghannay","orcid":"https://orcid.org/0000-0002-7531-2522"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4387152856","display_name":"Laboratoire Interdisciplinaire des Sciences du Num\u00e9rique","ror":"https://ror.org/00rd81916","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sahar Ghannay","raw_affiliation_strings":["LISN\u2014CNRS/Universit\u00e9 Paris-Saclay , Orsay 91400,","STL - Sciences et Technologies des Langues - LISN (France)"],"raw_orcid":"https://orcid.org/0000-0002-7531-2522","affiliations":[{"raw_affiliation_string":"LISN\u2014CNRS/Universit\u00e9 Paris-Saclay , Orsay 91400,","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I277688954","https://openalex.org/I4387152856"]},{"raw_affiliation_string":"STL - Sciences et Technologies des Langues - LISN (France)","institution_ids":["https://openalex.org/I4387152856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091493314","display_name":"Fariza Tahi","orcid":"https://orcid.org/0000-0002-3975-5668"},"institutions":[{"id":"https://openalex.org/I277688954","display_name":"Universit\u00e9 Paris-Saclay","ror":"https://ror.org/03xjwb503","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, BioInformatique, Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fariza Tahi","raw_affiliation_strings":["Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,"],"raw_orcid":"https://orcid.org/0000-0002-3975-5668","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Saclay, Univ Evry, IBISC , Evry-Courcouronnes 91020,","institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5091493314"],"corresponding_institution_ids":["https://openalex.org/I277688954","https://openalex.org/I4210107733"],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":1.3046,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.80312864,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":99},"biblio":{"volume":"41","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0031999999191612005,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6502197980880737},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5680117011070251},{"id":"https://openalex.org/keywords/torsion","display_name":"Torsion (gastropod)","score":0.5361151099205017},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.42662695050239563},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.41393494606018066},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4028286337852478},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.23169520497322083},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22283655405044556},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20482701063156128},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11968576908111572},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.09261664748191833}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6502197980880737},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5680117011070251},{"id":"https://openalex.org/C77461463","wikidata":"https://www.wikidata.org/wiki/Q7827201","display_name":"Torsion (gastropod)","level":2,"score":0.5361151099205017},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.42662695050239563},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.41393494606018066},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4028286337852478},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.23169520497322083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22283655405044556},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20482701063156128},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11968576908111572},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.09261664748191833}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/bioinformatics/btaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf004","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf004/61381586/btaf004.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39775709","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39775709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:HAL:hal-04911519v1","is_oa":true,"landing_page_url":"https://hal.science/hal-04911519","pdf_url":"https://hal.science/hal-04911519/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics, 2025, 41 (1), pp.btaf004. &#x27E8;10.1093/bioinformatics/btaf004&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11758789","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11758789","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11758789/pdf/btaf004.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btaf004","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btaf004","pdf_url":"https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaf004/61381586/btaf004.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G3024506935","display_name":"Idex Paris-Saclay","funder_award_id":"ANR-11-IDEX-0003","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G3974623063","display_name":"Mondes num\u00e9riques: Donn\u00e9es, programmes et architectures distribu\u00e9s","funder_award_id":"ANR-11-LABX-0045","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5452207638","display_name":"Universit\u00e9 Paris-Saclay Doctoral Programme in Artificial Intelligence","funder_award_id":"ANR-20-THIA-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5724863866","display_name":null,"funder_award_id":"AD011014250","funder_id":"https://openalex.org/F4320326256","funder_display_name":"Grand \u00c9quipement National De Calcul Intensif"},{"id":"https://openalex.org/G6080747818","display_name":null,"funder_award_id":"UDOPIA-ANR-20-THIA-0013","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320326256","display_name":"Grand \u00c9quipement National De Calcul Intensif","ror":"https://ror.org/0010d1q40"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406170344.pdf","grobid_xml":"https://content.openalex.org/works/W4406170344.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1984543894","https://openalex.org/W1988409793","https://openalex.org/W2035091896","https://openalex.org/W2077064224","https://openalex.org/W2101136532","https://openalex.org/W2103589755","https://openalex.org/W2103894153","https://openalex.org/W2109683504","https://openalex.org/W2119896557","https://openalex.org/W2122774834","https://openalex.org/W2140673705","https://openalex.org/W2161151688","https://openalex.org/W2293818823","https://openalex.org/W2580963738","https://openalex.org/W2765459505","https://openalex.org/W2766848373","https://openalex.org/W2799989945","https://openalex.org/W2888012743","https://openalex.org/W2969715383","https://openalex.org/W2993552072","https://openalex.org/W3022554208","https://openalex.org/W3104468196","https://openalex.org/W3126546267","https://openalex.org/W3127238141","https://openalex.org/W3164094081","https://openalex.org/W3177828909","https://openalex.org/W3195820203","https://openalex.org/W3213615006","https://openalex.org/W4213095938","https://openalex.org/W4283585788","https://openalex.org/W4323037252","https://openalex.org/W4386704695","https://openalex.org/W4387931208","https://openalex.org/W4388520896","https://openalex.org/W4388539614","https://openalex.org/W4392393183","https://openalex.org/W4396721167","https://openalex.org/W4396908238","https://openalex.org/W4399708339","https://openalex.org/W4404755712","https://openalex.org/W6771169733"],"related_works":["https://openalex.org/W3030236128","https://openalex.org/W2906670751","https://openalex.org/W2597420727","https://openalex.org/W2993030379","https://openalex.org/W3046695129","https://openalex.org/W2982605064","https://openalex.org/W2024248021","https://openalex.org/W3174330474","https://openalex.org/W2971531865","https://openalex.org/W4388307780"],"abstract_inverted_index":{"MOTIVATION:":[0],"Predicting":[1],"the":[2,38,79,113,125,153,167,187,208],"3D":[3,22,196],"structure":[4,197],"of":[5,82,127,169,175,190],"RNA":[6,21,67,107,176,195],"is":[7,51,204],"an":[8],"ongoing":[9],"challenge":[10],"that":[11,121,151,163],"has":[12],"yet":[13],"to":[14,91,131],"be":[15],"completely":[16],"addressed":[17],"despite":[18],"continuous":[19],"advancements.":[20],"structures":[23],"rely":[24],"on":[25,207],"distances":[26],"between":[27],"residues":[28],"and":[29,88,109],"base":[30],"interactions":[31,104],"but":[32],"also":[33],"backbone":[34,177],"torsional":[35,39,68,108,128],"angles.":[36],"Knowing":[37],"angles":[40,69,111,129,156],"for":[41,64,105],"each":[42],"residue":[43],"could":[44],"help":[45],"reconstruct":[46],"its":[47],"global":[48],"folding,":[49],"which":[50],"what":[52],"we":[53,119,141],"tackle":[54],"in":[55,85,173,193],"this":[56],"work.":[57],"This":[58],"paper":[59],"presents":[60],"a":[61,97,144],"novel":[62],"approach":[63],"directly":[65],"predicting":[66,106],"from":[70,78,112],"raw":[71],"sequence":[72,114],"data.":[73],"Our":[74,181],"method":[75,123],"draws":[76],"inspiration":[77],"successful":[80],"application":[81],"language":[83,191],"models":[84,192],"various":[86],"domains":[87],"adapts":[89],"them":[90],"RNA.":[92],"RESULTS:":[93],"We":[94,161],"have":[95,142],"developed":[96],"language-based":[98],"model,":[99,140],"RNA-TorsionBERT,":[100],"incorporating":[101],"better":[102],"sequential":[103],"pseudo-torsional":[110],"only.":[115],"Through":[116],"extensive":[117],"benchmarking,":[118],"demonstrate":[120],"our":[122,138,158],"improves":[124],"prediction":[126],"compared":[130],"state-of-the-art":[132],"methods.":[133],"In":[134],"addition,":[135],"by":[136,157],"using":[137],"predictive":[139],"inferred":[143],"torsion":[145,178],"angle-dependent":[146],"scoring":[147],"function,":[148],"called":[149],"TB-MCQ,":[150],"replaces":[152],"true":[154],"reference":[155],"model":[159],"prediction.":[160,198],"show":[162],"it":[164],"accurately":[165],"evaluates":[166],"quality":[168],"near-native":[170],"predicted":[171],"structures,":[172],"terms":[174],"angle":[179],"values.":[180],"work":[182],"demonstrates":[183],"promising":[184],"results,":[185],"suggesting":[186],"potential":[188],"utility":[189],"advancing":[194],"AVAILABILITY":[199],"AND":[200],"IMPLEMENTATION:":[201],"Source":[202],"code":[203],"freely":[205],"available":[206],"EvryRNA":[209],"platform:":[210],"https://evryrna.ibisc.univ-evry.fr/evryrna/RNA-TorsionBERT.":[211]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
