{"id":"https://openalex.org/W4406410494","doi":"https://doi.org/10.1093/bioinformatics/btae750","title":"Heterogeneous entity representation for medicinal synergy prediction","display_name":"Heterogeneous entity representation for medicinal synergy prediction","publication_year":2024,"publication_date":"2024-12-26","ids":{"openalex":"https://openalex.org/W4406410494","doi":"https://doi.org/10.1093/bioinformatics/btae750","pmid":"https://pubmed.ncbi.nlm.nih.gov/39814068"},"language":"en","primary_location":{"id":"doi:10.1093/bioinformatics/btae750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/1/btae750/61444843/btae750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/bioinformatics/article-pdf/41/1/btae750/61444843/btae750.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101304688","display_name":"Jiawei Wu","orcid":"https://orcid.org/0009-0003-1375-7344"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jiawei Wu","raw_affiliation_strings":["School of Medicine, National University of Singapore , Singapore 119077,","National University of Singapore School of Medicine, , 119077,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, National University of Singapore , Singapore 119077,","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"National University of Singapore School of Medicine, , 119077,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jun Wen","orcid":"https://orcid.org/0000-0001-5067-2647"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jun Wen","raw_affiliation_strings":["Harvard Medical School, Harvard University , Boston, MA 02115,","Harvard University Harvard Medical School, , Boston, MA 02115,"],"raw_orcid":"https://orcid.org/0000-0001-5067-2647","affiliations":[{"raw_affiliation_string":"Harvard Medical School, Harvard University , Boston, MA 02115,","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard University Harvard Medical School, , Boston, MA 02115,","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077766154","display_name":"Mingyuan Yan","orcid":"https://orcid.org/0000-0002-5211-7329"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Mingyuan Yan","raw_affiliation_strings":["School of Medicine, National University of Singapore , Singapore 119077,","National University of Singapore School of Medicine, , 119077,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Medicine, National University of Singapore , Singapore 119077,","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"National University of Singapore School of Medicine, , 119077,","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058247970","display_name":"Anqi Dong","orcid":"https://orcid.org/0000-0002-0365-0733"},"institutions":[{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Anqi Dong","raw_affiliation_strings":["Division of Decision and Control Systems and Department of Mathematics, KTH Royal Institute of Technology , Stockholm SE-100 44,","KTH Royal Institute of Technology Division of Decision and Control Systems and Department of Mathematics, , Stockholm, SE-100 44,"],"raw_orcid":"https://orcid.org/0000-0002-0365-0733","affiliations":[{"raw_affiliation_string":"Division of Decision and Control Systems and Department of Mathematics, KTH Royal Institute of Technology , Stockholm SE-100 44,","institution_ids":["https://openalex.org/I86987016"]},{"raw_affiliation_string":"KTH Royal Institute of Technology Division of Decision and Control Systems and Department of Mathematics, , Stockholm, SE-100 44,","institution_ids":["https://openalex.org/I86987016"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101662316","display_name":"Shuai Gao","orcid":"https://orcid.org/0000-0001-6802-9553"},"institutions":[{"id":"https://openalex.org/I1283280774","display_name":"Brigham and Women's Hospital","ror":"https://ror.org/04b6nzv94","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1283280774","https://openalex.org/I48633490"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuai Gao","raw_affiliation_strings":["Harvey Cushing Neuro-Oncology Laboratories, Department of Neurosurgery, Brigham and Women\u2019s Hospital, Harvard Medical School , Boston, MA 02115,","Harvard Medical School Harvey Cushing Neuro-Oncology Laboratories, Department of Neurosurgery, Brigham and Women\u2019s Hospital, , Boston, MA 02115,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvey Cushing Neuro-Oncology Laboratories, Department of Neurosurgery, Brigham and Women\u2019s Hospital, Harvard Medical School , Boston, MA 02115,","institution_ids":["https://openalex.org/I1283280774"]},{"raw_affiliation_string":"Harvard Medical School Harvey Cushing Neuro-Oncology Laboratories, Department of Neurosurgery, Brigham and Women\u2019s Hospital, , Boston, MA 02115,","institution_ids":["https://openalex.org/I1283280774","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100339138","display_name":"Ren Wang","orcid":"https://orcid.org/0000-0002-6366-8898"},"institutions":[{"id":"https://openalex.org/I180949307","display_name":"Illinois Institute of Technology","ror":"https://ror.org/037t3ry66","country_code":"US","type":"education","lineage":["https://openalex.org/I180949307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ren Wang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Illinois Institute of Technology , Chicago, IL 60616,","Illinois Institute of Technology Department of Electrical and Computer Engineering, , Chicago, IL 60616,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Illinois Institute of Technology , Chicago, IL 60616,","institution_ids":["https://openalex.org/I180949307"]},{"raw_affiliation_string":"Illinois Institute of Technology Department of Electrical and Computer Engineering, , Chicago, IL 60616,","institution_ids":["https://openalex.org/I180949307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100761812","display_name":"Can Chen","orcid":"https://orcid.org/0000-0003-2310-0074"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Can Chen","raw_affiliation_strings":["Department of Mathematics, University of North Carolina at Chapel Hill , Chapel Hill, NC 27599,","School of Data Science and Society, University of North Carolina at Chapel Hill , Chapel Hill, NC 27599,","University of North Carolina at Chapel Hill School of Data Science and Society, , NC 27599,","University of North Carolina at Chapel Hill Department of Mathematics, , NC 27599,"],"raw_orcid":"https://orcid.org/0000-0003-2310-0074","affiliations":[{"raw_affiliation_string":"Department of Mathematics, University of North Carolina at Chapel Hill , Chapel Hill, NC 27599,","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"School of Data Science and Society, University of North Carolina at Chapel Hill , Chapel Hill, NC 27599,","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill School of Data Science and Society, , NC 27599,","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"University of North Carolina at Chapel Hill Department of Mathematics, , NC 27599,","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3618,"currency":"USD","value_usd":3618},"apc_paid":{"value":3618,"currency":"USD","value_usd":3618},"fwci":0.7748,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.75904503,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"41","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9412000179290771,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9412000179290771,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6586557626724243},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5989869832992554},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36208653450012207}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6586557626724243},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5989869832992554},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36208653450012207},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":true},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000970","descriptor_name":"Antineoplastic Agents","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004357","descriptor_name":"Drug Synergism","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D055808","descriptor_name":"Drug Discovery","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/bioinformatics/btae750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/1/btae750/61444843/btae750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39814068","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39814068","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics (Oxford, England)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11745903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11745903","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11745903/pdf/btae750.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/bioinformatics/btae750","is_oa":true,"landing_page_url":"https://doi.org/10.1093/bioinformatics/btae750","pdf_url":"https://academic.oup.com/bioinformatics/article-pdf/41/1/btae750/61444843/btae750.pdf","source":{"id":"https://openalex.org/S52395412","display_name":"Bioinformatics","issn_l":"1367-4803","issn":["1367-4803","1367-4811"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406410494.pdf","grobid_xml":"https://content.openalex.org/works/W4406410494.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1520790719","https://openalex.org/W1578932543","https://openalex.org/W2002226820","https://openalex.org/W2043398720","https://openalex.org/W2061136308","https://openalex.org/W2097674253","https://openalex.org/W2103562758","https://openalex.org/W2108068107","https://openalex.org/W2118151336","https://openalex.org/W2127640925","https://openalex.org/W2140239055","https://openalex.org/W2299417213","https://openalex.org/W2531057506","https://openalex.org/W2608863179","https://openalex.org/W2767891136","https://openalex.org/W2775061087","https://openalex.org/W2899070097","https://openalex.org/W2907492528","https://openalex.org/W2983166786","https://openalex.org/W2995222684","https://openalex.org/W2998496395","https://openalex.org/W3085990079","https://openalex.org/W3093840532","https://openalex.org/W3096403953","https://openalex.org/W3102269903","https://openalex.org/W3127930610","https://openalex.org/W3164087725","https://openalex.org/W3203908308","https://openalex.org/W4212966936","https://openalex.org/W4293214728","https://openalex.org/W4318983406","https://openalex.org/W4366986540","https://openalex.org/W4379469450","https://openalex.org/W4382119297","https://openalex.org/W6630087019","https://openalex.org/W6685350579","https://openalex.org/W6748564180","https://openalex.org/W6767098714","https://openalex.org/W6850555256"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"MOTIVATION:":[0],"Forecasting":[1],"the":[2,31,93,144],"synergistic":[3,94,145],"effects":[4,95,146],"of":[5,24,96,147],"drug":[6,9,49,103,148],"combinations":[7,50],"facilitates":[8],"discovery":[10],"and":[11,40,58,109],"development,":[12],"especially":[13],"regarding":[14],"cancer":[15],"therapeutics.":[16],"While":[17],"numerous":[18],"computational":[19],"methods":[20,141],"have":[21],"emerged,":[22],"most":[23],"them":[25],"fall":[26],"short":[27],"in":[28,142,151],"fully":[29],"modeling":[30,62],"relationships":[32,55],"among":[33],"clinical":[34,111],"entities":[35],"including":[36,102],"drugs,":[37],"cell":[38],"lines,":[39],"diseases,":[41],"which":[42],"hampers":[43],"their":[44],"ability":[45],"to":[46,48,63,91,125],"generalize":[47],"involving":[51,153],"unseen":[52,154],"drugs.":[53,98,155],"These":[54],"are":[56,113],"complex":[57],"multidimensional,":[59],"requiring":[60],"sophisticated":[61],"capture":[64],"nuanced":[65],"interplay":[66],"that":[67],"can":[68],"significantly":[69,138],"influence":[70],"therapeutic":[71],"efficacy.":[72],"RESULTS:":[73],"We":[74],"present":[75],"a":[76,121],"novel":[77],"deep":[78],"hypergraph":[79,116],"learning":[80],"method":[81],"named":[82],"Heterogeneous":[83,99],"Entity":[84],"Representation":[85],"for":[86],"MEdicinal":[87],"Synergy":[88],"(HERMES)":[89],"prediction":[90],"predict":[92],"anti-cancer":[97],"data":[100],"sources,":[101],"chemical":[104],"structures,":[105],"gene":[106],"expression":[107],"profiles,":[108],"disease":[110],"semantics,":[112],"integrated":[114],"into":[115],"neural":[117],"networks":[118],"equipped":[119],"with":[120],"gated":[122],"residual":[123],"mechanism":[124],"enhance":[126],"high-order":[127],"relationship":[128],"modeling.":[129],"HERMES":[130],"demonstrates":[131],"state-of-the-art":[132],"performance":[133],"on":[134],"two":[135],"benchmark":[136],"datasets,":[137],"outperforming":[139],"existing":[140],"predicting":[143],"combinations,":[149],"particularly":[150],"cases":[152],"AVAILABILITY":[156],"AND":[157],"IMPLEMENTATION:":[158],"The":[159],"source":[160],"code":[161],"is":[162],"available":[163],"at":[164],"https://github.com/Christina327/HERMES.":[165]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
